(24 nodes) Periplasmic binding protein-like I network (Janthinobacterium agaricidamnosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GJA_1092	Receptor ligand binding region family protein. (378 aa)
	GJA_1094	Receptor ligand binding region family protein. (378 aa)
	GJA_1840	Tat (twin-arginine translocation) pathway signal sequence domain protein. (417 aa)
	GJA_2988	Periplasmic binding s and sugar binding domain of the LacI family protein. (336 aa)
	GJA_2143	Transcriptional regulator, LacI family. (335 aa)
	GJA_2702	Periplasmic binding s and sugar binding domain of the LacI family protein. (377 aa)
	GJA_2762	DNA-binding protein. (344 aa)
	rbsR	Ribose operon repressor. (348 aa)
	GJA_1093	Receptor ligand binding region family protein. (378 aa)
	GJA_965	Bacterial regulatory s, lacI family protein. (345 aa)
	GJA_5474	Glycosylase protein. (392 aa)
	GJA_5272	Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein. (402 aa)
	livK	Branched-chain amino acid transport system substrate-binding protein. (439 aa)
	GJA_5127	Alanine racemase. (328 aa)
	GJA_5124	Periplasmic binding s and sugar binding domain of the LacI family protein. (321 aa)
	GJA_5114	Bacterial regulatory s, lacI family protein. (336 aa)
	GJA_4423	Basic membrane family protein. (331 aa)
	GJA_4240	Basic membrane family protein. (362 aa)
	GJA_3386	Bacterial regulatory s, lacI family protein. (335 aa)
	GJA_336	Bacterial regulatory s, lacI family protein. (330 aa)
	GJA_3000	Bacterial regulatory s, lacI family protein. (346 aa)
	GJA_285	Periplasmic binding s and sugar binding domain of the LacI family protein. (333 aa)
	GJA_289	Bacterial regulatory s, lacI family protein. (330 aa)
	GJA_103	Periplasmic binding s and sugar binding domain of the LacI family protein. (313 aa)

Your Current Organism:

Janthinobacterium agaricidamnosum

NCBI taxonomy Id: 1349767
Other names: J. agaricidamnosum NBRC 102515 = DSM 9628, Janthinobacterium agaricidamnosum DSM 9628, Janthinobacterium agaricidamnosum DSM 9628 = NBRC 102515, Janthinobacterium agaricidamnosum NBRC 102515, Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GJA_103	GJA_2143	GJA_103	GJA_2143	Periplasmic binding s and sugar binding domain of the LacI family protein.	Transcriptional regulator, LacI family.	0.411
GJA_103	GJA_289	GJA_103	GJA_289	Periplasmic binding s and sugar binding domain of the LacI family protein.	Bacterial regulatory s, lacI family protein.	0.410
GJA_103	GJA_5124	GJA_103	GJA_5124	Periplasmic binding s and sugar binding domain of the LacI family protein.	Periplasmic binding s and sugar binding domain of the LacI family protein.	0.928
GJA_103	rbsR	GJA_103	GJA_106	Periplasmic binding s and sugar binding domain of the LacI family protein.	Ribose operon repressor.	0.789
GJA_1092	GJA_1093	GJA_1092	GJA_1093	Receptor ligand binding region family protein.	Receptor ligand binding region family protein.	0.939
GJA_1092	GJA_1094	GJA_1092	GJA_1094	Receptor ligand binding region family protein.	Receptor ligand binding region family protein.	0.924
GJA_1092	GJA_5272	GJA_1092	GJA_5272	Receptor ligand binding region family protein.	Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein.	0.911
GJA_1092	livK	GJA_1092	GJA_5224	Receptor ligand binding region family protein.	Branched-chain amino acid transport system substrate-binding protein.	0.900
GJA_1093	GJA_1092	GJA_1093	GJA_1092	Receptor ligand binding region family protein.	Receptor ligand binding region family protein.	0.939
GJA_1093	GJA_1094	GJA_1093	GJA_1094	Receptor ligand binding region family protein.	Receptor ligand binding region family protein.	0.942
GJA_1093	GJA_5272	GJA_1093	GJA_5272	Receptor ligand binding region family protein.	Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein.	0.911
GJA_1093	livK	GJA_1093	GJA_5224	Receptor ligand binding region family protein.	Branched-chain amino acid transport system substrate-binding protein.	0.900
GJA_1094	GJA_1092	GJA_1094	GJA_1092	Receptor ligand binding region family protein.	Receptor ligand binding region family protein.	0.924
GJA_1094	GJA_1093	GJA_1094	GJA_1093	Receptor ligand binding region family protein.	Receptor ligand binding region family protein.	0.942
GJA_1094	GJA_5272	GJA_1094	GJA_5272	Receptor ligand binding region family protein.	Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein.	0.900
GJA_1094	livK	GJA_1094	GJA_5224	Receptor ligand binding region family protein.	Branched-chain amino acid transport system substrate-binding protein.	0.900
GJA_2143	GJA_103	GJA_2143	GJA_103	Transcriptional regulator, LacI family.	Periplasmic binding s and sugar binding domain of the LacI family protein.	0.411
GJA_2762	GJA_2988	GJA_2762	GJA_2988	DNA-binding protein.	Periplasmic binding s and sugar binding domain of the LacI family protein.	0.581
GJA_285	GJA_289	GJA_285	GJA_289	Periplasmic binding s and sugar binding domain of the LacI family protein.	Bacterial regulatory s, lacI family protein.	0.543
GJA_285	GJA_2988	GJA_285	GJA_2988	Periplasmic binding s and sugar binding domain of the LacI family protein.	Periplasmic binding s and sugar binding domain of the LacI family protein.	0.513

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