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| | SLK23064.1 | Putative ParB-like partition protein; Belongs to the ParB family. (283 aa) |
| | dnaA | Putative Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (452 aa) |
| | SLK09819.1 | Putative DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initi [...] (366 aa) |
| | recF | Putative DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (361 aa) |
| | gyrB | Putative DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (638 aa) |
| | gyrA | Putative DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (853 aa) |
| | SLK10168.1 | Putative Transcriptional regulator. (334 aa) |
| | addB | Putative ATP-dependent helicase/deoxyribonuclease subunit B; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily. (1145 aa) |
| | addA | Putative Recombination helicase AddA; ATP-dependent DNA helicase. (1248 aa) |
| | SLK10292.1 | Hypothetical protein. (193 aa) |
| | SLK10309.1 | Transposase, Mutator family; Required for the transposition of the insertion element. (412 aa) |
| | SLK10433.1 | Transposase, Mutator family. (412 aa) |
| | SLK10465.1 | Putative Helix-turn-helix domain protein. (226 aa) |
| | SLK10585.1 | Putative HTH-type transcriptional regulator RegA. (332 aa) |
| | SLK10640.1 | Putative Cyclic nucleotide-binding domain protein. (227 aa) |
| | SLK10776.1 | Putative Transcriptional regulator, PadR family. (151 aa) |
| | SLK10873.1 | Putative Purine operon repressor, PurR. (271 aa) |
| | spoVG | Septation protein SpoVG; Could be involved in septation. (94 aa) |
| | SLK10925.1 | Putative Transcriptional regulatory protein. (230 aa) |
| | mfd | Putative Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1170 aa) |
| | SLK10997.1 | Putative Stage V sporulation protein T. (182 aa) |
| | SLK11026.1 | Putative DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (91 aa) |
| | greA | Putative Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (160 aa) |
| | tRNA-Pro-2_2 | Putative DNA polymerase III subunits gamma and tau. (310 aa) |
| | SLK11432.1 | Putative Transcriptional regulator CtsR; Belongs to the CtsR family. (151 aa) |
| | SLK11486.1 | Putative Transcriptional regulator, GntR family. (240 aa) |
| | radA | Putative DNA repair protein radA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (455 aa) |
| | disA | Putative nucleic-acid-binding protein (Contains the HHH domain); Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation; upon encountering a lesion, the DisA focus arrests at the damaged site and halts c-di-AMP synthesis. (354 aa) |
| | SLK11617.1 | RNA polymerase factor sigma-70. (214 aa) |
| | nusG | Putative Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. (173 aa) |
| | rpoB | Putative DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1236 aa) |
| | rpoC | Putative DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1177 aa) |
| | rpoA | Putative DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (315 aa) |
| | SLK12017.1 | Putative Two component transcriptional regulator,winged helix family. (231 aa) |
| | SLK12207.1 | Hypothetical protein; Putative TrpR homolog, YerC/YecD family. (98 aa) |
| | SLK12264.1 | Transposase DDE domain protein. (545 aa) |
| | SLK12468.1 | Transposase, Mutator family. (412 aa) |
| | SLK12510.1 | Putative Transcriptional regulator, RpiR family. (278 aa) |
| | SLK12595.1 | Putative FCD domain protein. (229 aa) |
| | SLK12684.1 | Putative Response regulator receiver domain protein. (504 aa) |
| | SLK12692.1 | Putative RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (179 aa) |
| | SLK12774.1 | Hypothetical protein. (101 aa) |
| | SLK12926.1 | Putative Transcriptional regulator, DeoR family. (263 aa) |
| | SLK13128.1 | Putative RNA polymerase sigma factor,sigma-70 family. (194 aa) |
| | SLK13528.1 | Putative Replicative DNA helicase. (443 aa) |
| | SLK13578.1 | Putative UvrD/REP helicase. (613 aa) |
| | SLK13596.1 | Putative Transcriptional regulator, MerR family protein. (230 aa) |
| | SLK13686.1 | Putative Two component transcriptional regulator,winged helix family. (224 aa) |
| | SLK13755.1 | Putative Transcriptional regulator, PadR-like protein family. (111 aa) |
| | SLK13887.1 | Putative Two-component response regulator. (232 aa) |
| | SLK13929.1 | Hypothetical protein. (64 aa) |
| | SLK13952.1 | Putative Response regulator of the LytR/AlgR family protein. (146 aa) |
| | SLK14241.1 | Hypothetical protein. (137 aa) |
| | SLK14273.1 | Putative Two component transcriptional regulator,winged helix family. (232 aa) |
| | SLK14352.1 | Putative SIS domain protein. (282 aa) |
| | nfo | Putative endonuclease 4; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (277 aa) |
| | SLK14438.1 | Hypothetical protein. (88 aa) |
| | SLK14461.1 | Transposase DDE domain protein. (545 aa) |
| | SLK14473.1 | Transposase, Mutator family; Required for the transposition of the insertion element. (412 aa) |
| | SLK14481.1 | Putative Response regulator receiver domain protein. (45 aa) |
| | SLK14495.1 | Putative Two component transcriptional regulator,AraC family. (359 aa) |
| | SLK14523.1 | Putative LacI family transcription regulator. (327 aa) |
| | SLK14566.1 | Transposase, Mutator family; Required for the transposition of the insertion element. (412 aa) |
| | SLK14641.1 | Putative MerR family transcriptional regulator. (268 aa) |
| | SLK14714.1 | Putative AraC family DNA-binding response regulator. (493 aa) |
| | SLK14735.1 | Hypothetical protein. (247 aa) |
| | SLK14795.1 | Putative cAMP-binding protein. (229 aa) |
| | SLK14855.1 | Hypothetical protein. (82 aa) |
| | SLK14873.1 | Transposase DDE domain protein. (545 aa) |
| | SLK14891.1 | Putative Mrr restriction system protein. (287 aa) |
| | SLK14896.1 | Putative Transcriptional regulator PadR family protein. (121 aa) |
| | SLK14972.1 | Putative Two component transcriptional regulator,LytTR family. (237 aa) |
| | SLK15155.1 | Putative ABC transporter related. (638 aa) |
| | SLK15231.1 | Putative DNA topoisomerase (ATP-hydrolyzing). (648 aa) |
| | SLK15235.1 | Putative DNA gyrase subunit A. (970 aa) |
| | SLK15256.1 | Hypothetical protein. (59 aa) |
| | SLK15531.1 | Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (241 aa) |
| | SLK15560.1 | Putative Transcriptional regulator. (176 aa) |
| | dinB | Putative DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (348 aa) |
| | SLK15659.1 | Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (251 aa) |
| | SLK15675.1 | Putative DNA polymerase III, delta subunit. (343 aa) |
| | hrcA | Putative Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (343 aa) |
| | SLK15865.1 | Putative CBS domain protein. (212 aa) |
| | dnaG | Putative DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (593 aa) |
| | sigA | Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (369 aa) |
| | SLK15920.1 | Putative Transcriptional regulator, LacI family. (331 aa) |
| | SLK16021.1 | Putative DNA-binding protein. (179 aa) |
| | SLK16028.1 | Putative Acetyltransferase, gnat family. (365 aa) |
| | birA | Putative Biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. (326 aa) |
| | SLK16126.1 | Transposase, Mutator family. (412 aa) |
| | SLK16155.1 | Putative Transcriptional regulator, AsnC family. (155 aa) |
| | SLK16398.1 | Putative Two component transcriptional regulator,winged helix family. (220 aa) |
| | cas1 | Putative CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (332 aa) |
| | SLK16490.1 | Transposase, Mutator family; Required for the transposition of the insertion element. (388 aa) |
| | SLK16825.1 | Transposase DDE domain protein. (545 aa) |
| | SLK16916.1 | Putative ATPase, AAA family. (414 aa) |
| | SLK16918.1 | Putative Rrf2 family protein. (150 aa) |
| | SLK17021.1 | Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (231 aa) |
| | SLK17040.1 | Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (235 aa) |
| | SLK17043.1 | Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (259 aa) |
| | nrdR | Putative Transcriptional repressor NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (151 aa) |
| | SLK17060.1 | Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP; Putative Response regulator (CheY-like receiver and winged helix DNA-binding domain containing protein). (232 aa) |
| | SLK17117.1 | Putative UPF0296 protein CLL_A1210; Belongs to the RemA family. (89 aa) |
| | rpoZ | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (72 aa) |
| | priA | Putative Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (733 aa) |
| | SLK17222.1 | Hypothetical protein. (178 aa) |
| | smc | Putative Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1187 aa) |
| | SLK17326.1 | Putative SMF family protein. (350 aa) |
| | topA | Putative DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing D [...] (705 aa) |
| | codY | Putative GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. (258 aa) |
| | polC | Putative DNA polymerase III PolC-type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (1441 aa) |
| | SLK17500.1 | Putative stage III sporulation protein E. (806 aa) |
| | recA | Putative Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (350 aa) |
| | SLK17566.1 | Transposase, Mutator family; Required for the transposition of the insertion element. (412 aa) |
| | SLK17577.1 | Putative Tetratricopeptide repeat domain protein. (398 aa) |
| | SLK17624.1 | Transposase, Mutator family. (412 aa) |
| | SLK17650.1 | Putative Transcriptional regulatory protein. (235 aa) |
| | SLK17811.1 | Putative transcriptional regulator. (160 aa) |
| | SLK17856.1 | Putative Transcriptional regulator, DeoR family. (254 aa) |
| | SLK17996.1 | Putative ABC transporter ATP-binding protein uup. (640 aa) |
| | SLK18015.1 | Putative Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. (455 aa) |
| | lexA | Putative LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (204 aa) |
| | mutL | Putative DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (637 aa) |
| | mutS | Putative DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (884 aa) |
| | SLK18111.1 | Hypothetical protein. (270 aa) |
| | SLK18160.1 | Putative NERD domain protein. (264 aa) |
| | SLK18202.1 | Putative SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response). (473 aa) |
| | SLK18330.1 | Putative DNA polymerase III, epsilon subunit. (859 aa) |
| | SLK18343.1 | PadR family transcriptional regulator. (129 aa) |
| | SLK18380.1 | Putative Transcriptional regulator, TetR family protein. (183 aa) |
| | SLK18429.1 | Putative Phage integrase family protein; Belongs to the 'phage' integrase family. (292 aa) |
| | SLK18478.1 | Putative DNA integration/recombination protein; Belongs to the 'phage' integrase family. (333 aa) |
| | SLK18482.1 | Putative Response regulator receiver protein; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. (268 aa) |
| | argR | Putative Arginine repressor; Regulates arginine biosynthesis genes. (149 aa) |
| | mraZ | Putative Protein MraZ; Belongs to the MraZ family. (142 aa) |
| | SLK18806.1 | Putative Response regulator (CheY-like and AraC-type DNA-binding domain containing protein). (537 aa) |
| | SLK18898.1 | Putative MutS2 protein. (71 aa) |
| | mutS2 | Putative MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (708 aa) |
| | SLK19091.1 | Putative Small acid-soluble spore protein. (83 aa) |
| | SLK19128.1 | Putative Single-stranded DNA binding protein. (223 aa) |
| | SLK19134.1 | Hypothetical protein. (177 aa) |
| | SLK19214.1 | Transposase, Mutator family. (412 aa) |
| | SLK19224.1 | Putative Two component transcriptional regulator,winged helix family. (225 aa) |
| | topB | Putative DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing D [...] (727 aa) |
| | SLK19315.1 | Hypothetical protein. (250 aa) |
| | SLK19369.1 | Hypothetical protein. (90 aa) |
| | SLK19375.1 | Putative ATP-dependent DNA helicase RecQ. (811 aa) |
| | ruvB | Putative Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (342 aa) |
| | ruvA | Putative Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (201 aa) |
| | SLK19450.1 | Putative Regulatory protein TetR. (199 aa) |
| | SLK19458.1 | Putative=3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family. (203 aa) |
| | SLK19502.1 | Putative transcriptional regulatory protein. (243 aa) |
| | SLK19700.1 | Putative DNA-Invertase BINR (Transposon TN552). (192 aa) |
| | SLK19704.1 | Putative Phage integrase family protein. (212 aa) |
| | SLK19718.1 | Putative Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (434 aa) |
| | SLK19721.1 | Hypothetical protein. (163 aa) |
| | SLK19730.1 | Hypothetical protein. (63 aa) |
| | SLK19732.1 | Putative transcriptional regulator. (124 aa) |
| | SLK19806.1 | Transposase DDE domain protein. (545 aa) |
| | SLK19809.1 | Putative DNA topoisomerase. (654 aa) |
| | polA | Putative DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. (868 aa) |
| | SLK20139.1 | Putative N-6 DNA methylase. (483 aa) |
| | SLK20168.1 | Putative helicase. (758 aa) |
| | SLK20327.1 | Putative Two-component response regulator. (165 aa) |
| | SLK20346.1 | Putative sucrose operon repressor. (330 aa) |
| | SLK20497.1 | Hypothetical protein. (67 aa) |
| | SLK20563.1 | Hypothetical protein. (341 aa) |
| | SLK20627.1 | Hypothetical protein. (340 aa) |
| | SLK20630.1 | Putative MutS domain protein (fragment). (210 aa) |
| | greA-2 | Putative GreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (154 aa) |
| | SLK20879.1 | Putative UvrD/REP helicase. (226 aa) |
| | SLK20883.1 | Putative Helicase, UvrD/REP family. (435 aa) |
| | lon | Putative Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (777 aa) |
| | SLK21011.1 | Hypothetical protein. (60 aa) |
| | SLK21016.1 | Hypothetical protein. (60 aa) |
| | SLK21021.1 | Hypothetical protein. (60 aa) |
| | SLK21057.1 | Putative Transcriptional regulatory protein. (689 aa) |
| | SLK21063.1 | Putative Tetratricopeptide repeat protein. (420 aa) |
| | SLK21158.1 | Hypothetical protein. (346 aa) |
| | SLK21169.1 | Transposase DDE domain protein. (490 aa) |
| | SLK21174.1 | Putative ABC transporter, permease/ATP-binding protein. (965 aa) |
| | SLK21250.1 | Putative RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. (175 aa) |
| | SLK21268.1 | Putative Transcriptional regulator, PucR family. (381 aa) |
| | SLK21391.1 | Hypothetical protein. (278 aa) |
| | SLK21441.1 | Putative SMC domain protein. (1016 aa) |
| | SLK21540.1 | Putative HTH-type transcriptional repressor NsrR. (131 aa) |
| | SLK21555.1 | Putative Signal-transduction and transcriptional-control protein. (632 aa) |
| | SLK21586.1 | Putative Sugar-binding transcriptional regulator,LacI family. (346 aa) |
| | SLK21661.1 | Putative RNA polymerase sigma factor sigma54. (458 aa) |
| | SLK21665.1 | Transposase DDE domain protein. (545 aa) |
| | SLK21698.1 | Putative Regulatory protein VanR. (238 aa) |
| | nth | Putative Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (215 aa) |
| | SLK21751.1 | Putative ATP-dependent DNA helicase RecQ. (587 aa) |
| | SLK21793.1 | Putative regulatory protein. (416 aa) |
| | SLK21794.1 | Putative Helicase protein. (1114 aa) |
| | SLK21795.1 | Putative Fic family protein (fragment). (448 aa) |
| | SLK21798.1 | Putative Integrase family protein; Belongs to the 'phage' integrase family. (327 aa) |
| | SLK21800.1 | Putative Type I restriction-modification system specificity subunit. (383 aa) |
| | SLK21804.1 | Putative Type I restriction enzyme M subunit. (487 aa) |
| | SLK21822.1 | Putative Competence protein ComEA-like protein with helix-hairpin-helix repeat region. (231 aa) |
| | SLK22007.1 | Hypothetical protein; Belongs to the UPF0246 family. (255 aa) |
| | SLK22015.1 | Putative MutS domain protein; Belongs to the DNA mismatch repair MutS family. (599 aa) |
| | SLK22027.1 | Putative Small, acid-soluble spore protein 1. (60 aa) |
| | SLK22043.1 | Transposase DDE domain protein. (545 aa) |
| | SLK22157.1 | Hypothetical protein. (338 aa) |
| | recD2 | Helicase, putative, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (743 aa) |
| | SLK23066.1 | Putative ParB-like partition protein; Belongs to the ParB family. (262 aa) |
| | SLK22197.1 | Putative Stage III sporulation protein D. (83 aa) |
| | SLK22349.1 | Putative Alkaline phosphatase synthesis transcriptional regulatory protein PhoP. (226 aa) |
| | ligA | Putative DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (663 aa) |
| | SLK22407.1 | Putative ATP-dependent DNA helicase PcrA. (799 aa) |
| | SLK22445.1 | Putative Transcriptional regulator, GntR family. (242 aa) |
| | SLK22471.1 | Putative=8-oxoguanine DNA glycosylase domain protein. (314 aa) |
| | rex | Putative Redox-sensing transcriptional repressor rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (223 aa) |
| | SLK22534.1 | Hypothetical protein. (336 aa) |
| | SLK22538.1 | Transposase, Mutator family. (412 aa) |
| | SLK22541.1 | Helicase, putative. (701 aa) |
| | SLK22614.1 | Putative DNA-binding response regulator. (225 aa) |
| | SLK22619.1 | Putative Sigma-54 dependent transcriptional regulator. (462 aa) |
| | SLK22624.1 | Putative ROK family protein. (397 aa) |
| | SLK22626.1 | Transposase DDE domain protein. (545 aa) |
| | SLK22646.1 | Transposase, Mutator family. (412 aa) |
| | whiA | Putative sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation. (316 aa) |
| | SLK22698.1 | Putative Two component transcriptional regulator,LytTR family. (239 aa) |
| | uvrC | Putative UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (619 aa) |
| | uvrA | Putative UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (941 aa) |
| | SLK22752.1 | Putative Transcriptional regulatory protein. (145 aa) |
| | SLK22755.1 | Putative Transcriptional regulatory protein. (59 aa) |
| | uvrB | Putative UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits disso [...] (655 aa) |
| | SLK22806.1 | mRNA interferase PemK; Toxic component of a type II toxin-antitoxin (TA) system. (117 aa) |
| | SLK22823.1 | Putative Single-stranded DNA-binding protein. (119 aa) |
| | SLK22832.1 | Putative DEAD_2 domain protein. (764 aa) |
| | SLK22835.1 | Hypothetical protein. (196 aa) |
| | SLK22836.1 | Putative transcriptional regulator. (79 aa) |
| | tRNA-Arg-1_5 | Putative Transcriptional regulator, AraC family. (285 aa) |
| | recR | Putative Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (198 aa) |
| | SLK22966.1 | Putative DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (114 aa) |
| | dnaX | Putative DNA polymerase III, gamma and tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (541 aa) |
| | SLK22982.1 | Rrf2 family protein, putative transcriptional regulator. (69 aa) |
| | SLK22983.1 | Rrf2 family protein, putative transcriptional regulator. (59 aa) |
| | SLK22989.1 | Putative Transcriptional regulator, merR family. (267 aa) |
| | SLK22994.1 | Hypothetical protein. (433 aa) |
| | SLK23000.1 | Transposase DDE domain protein. (545 aa) |
| | SLK23019.1 | Putative DnaD-like protein. (331 aa) |
| | SLK23038.1 | Putative Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (445 aa) |
| | SLK23046.1 | Putative Single-stranded DNA-binding protein. (153 aa) |
| | SLK23063.1 | Hypothetical protein. (165 aa) |
