STRINGSTRING
SLK20392.1 SLK20392.1 SLK20410.1 SLK20410.1 SLK20475.1 SLK20475.1 SLK20506.1 SLK20506.1 SLK20627.1 SLK20627.1 SLK20629.1 SLK20629.1 greA-2 greA-2 SLK20654.1 SLK20654.1 SLK20728.1 SLK20728.1 SLK20788.1 SLK20788.1 SLK20909.1 SLK20909.1 SLK20935.1 SLK20935.1 SLK20997.1 SLK20997.1 SLK21057.1 SLK21057.1 SLK21200.1 SLK21200.1 SLK21243.1 SLK21243.1 SLK21250.1 SLK21250.1 SLK21391.1 SLK21391.1 SLK21401.1 SLK21401.1 SLK21418.1 SLK21418.1 SLK21540.1 SLK21540.1 SLK21555.1 SLK21555.1 SLK21586.1 SLK21586.1 SLK21658.1 SLK21658.1 SLK21661.1 SLK21661.1 SLK21693.1 SLK21693.1 SLK21698.1 SLK21698.1 SLK22060.1 SLK22060.1 SLK22197.1 SLK22197.1 SLK22269.1 SLK22269.1 SLK22445.1 SLK22445.1 rex rex SLK22503.1 SLK22503.1 SLK13929.1 SLK13929.1 SLK14007.1 SLK14007.1 SLK14217.1 SLK14217.1 SLK14266.1 SLK14266.1 SLK14273.1 SLK14273.1 SLK14337.1 SLK14337.1 SLK14352.1 SLK14352.1 SLK14438.1 SLK14438.1 SLK14452.1 SLK14452.1 SLK14481.1 SLK14481.1 SLK14495.1 SLK14495.1 SLK14523.1 SLK14523.1 SLK14641.1 SLK14641.1 SLK14674.1 SLK14674.1 SLK14714.1 SLK14714.1 SLK14743.1 SLK14743.1 SLK14795.1 SLK14795.1 SLK14855.1 SLK14855.1 SLK14875.1 SLK14875.1 SLK14896.1 SLK14896.1 SLK15111.1 SLK15111.1 SLK15179.1 SLK15179.1 SLK15217.1 SLK15217.1 SLK15376.1 SLK15376.1 SLK15531.1 SLK15531.1 SLK15560.1 SLK15560.1 SLK15654.1 SLK15654.1 spoIIAB spoIIAB SLK15659.1 SLK15659.1 hrcA hrcA SLK15865.1 SLK15865.1 sigA sigA SLK15920.1 SLK15920.1 SLK16021.1 SLK16021.1 SLK16028.1 SLK16028.1 birA birA SLK16354.1 SLK16354.1 SLK20216.1 SLK20216.1 SLK20327.1 SLK20327.1 SLK17811.1 SLK17811.1 SLK17856.1 SLK17856.1 lexA lexA hfq hfq SLK18101.1 SLK18101.1 SLK18202.1 SLK18202.1 SLK18343.1 SLK18343.1 SLK18351.1 SLK18351.1 SLK18380.1 SLK18380.1 SLK20346.1 SLK20346.1 SLK18482.1 SLK18482.1 argR argR nusB nusB SLK18626.1 SLK18626.1 mraZ mraZ SLK18806.1 SLK18806.1 SLK16398.1 SLK16398.1 SLK19134.1 SLK19134.1 SLK19224.1 SLK19224.1 SLK19369.1 SLK19369.1 SLK19450.1 SLK19450.1 SLK19502.1 SLK19502.1 SLK19513.1 SLK19513.1 SLK19721.1 SLK19721.1 SLK19730.1 SLK19730.1 SLK19732.1 SLK19732.1 SLK19949.1 SLK19949.1 SLK20184.1 SLK20184.1 tRNA-Gly-1_1 tRNA-Gly-1_1 SLK10168.1 SLK10168.1 SLK10292.1 SLK10292.1 SLK10424.1 SLK10424.1 SLK10585.1 SLK10585.1 SLK10596.1 SLK10596.1 SLK10640.1 SLK10640.1 SLK10776.1 SLK10776.1 SLK10873.1 SLK10873.1 SLK10925.1 SLK10925.1 mfd mfd greA greA SLK11432.1 SLK11432.1 SLK11486.1 SLK11486.1 SLK11617.1 SLK11617.1 nusG nusG SLK12017.1 SLK12017.1 SLK12042.1 SLK12042.1 SLK12207.1 SLK12207.1 SLK12413.1 SLK12413.1 SLK12415.1 SLK12415.1 SLK12510.1 SLK12510.1 SLK12560.1 SLK12560.1 SLK12595.1 SLK12595.1 SLK12684.1 SLK12684.1 SLK12692.1 SLK12692.1 SLK12926.1 SLK12926.1 SLK12946.1 SLK12946.1 SLK13128.1 SLK13128.1 SLK13145.1 SLK13145.1 SLK17650.1 SLK17650.1 nusA nusA codY codY SLK17153.1 SLK17153.1 SLK17062.1 SLK17062.1 SLK17060.1 SLK17060.1 nrdR nrdR SLK17043.1 SLK17043.1 SLK17040.1 SLK17040.1 SLK17021.1 SLK17021.1 SLK16972.1 SLK16972.1 SLK16918.1 SLK16918.1 SLK16846.1 SLK16846.1 SLK16413.1 SLK16413.1 SLK13475.1 SLK13475.1 SLK13490.1 SLK13490.1 SLK13511.1 SLK13511.1 SLK13596.1 SLK13596.1 SLK13686.1 SLK13686.1 SLK22534.1 SLK22534.1 SLK22577.1 SLK22577.1 SLK22614.1 SLK22614.1 SLK22619.1 SLK22619.1 SLK22752.1 SLK22752.1 SLK22755.1 SLK22755.1 SLK22835.1 SLK22835.1 SLK22836.1 SLK22836.1 tRNA-Arg-1_5 tRNA-Arg-1_5 SLK22982.1 SLK22982.1 SLK22983.1 SLK22983.1 SLK22989.1 SLK22989.1 SLK23002.1 SLK23002.1 SLK23040.1 SLK23040.1 SLK13718.1 SLK13718.1 SLK13755.1 SLK13755.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SLK20392.1Putative Transcriptional regulator, MarR family. (147 aa)
SLK20410.1Putative Transcriptional regulator, DeoR family. (253 aa)
SLK20475.1Putative carbohydrate diacid regulator. (350 aa)
SLK20506.1Putative Transcriptional regulator, GntR family with aminotransferase domain. (466 aa)
SLK20627.1Hypothetical protein. (340 aa)
SLK20629.1Putative RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa)
greA-2Putative GreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (154 aa)
SLK20654.1Putative Transcriptional regulator, GntR family. (246 aa)
SLK20728.1Putative Cold shock protein. (69 aa)
SLK20788.1Putative Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (294 aa)
SLK20909.1Putative Transcriptional regulator, Fur family; Belongs to the Fur family. (135 aa)
SLK20935.1Putative ATP-dependent protease LonB. (573 aa)
SLK20997.1Putative Transcriptional regulator, GntR family. (124 aa)
SLK21057.1Putative Transcriptional regulatory protein. (689 aa)
SLK21200.1Putative Transcriptional regulator, GntR family. (133 aa)
SLK21243.1Hypothetical protein. (228 aa)
SLK21250.1Putative RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. (175 aa)
SLK21391.1Hypothetical protein. (278 aa)
SLK21401.1Putative Deoxyribonucleoside regulator. (311 aa)
SLK21418.1Putative MarR-family transcriptional regulator. (149 aa)
SLK21540.1Putative HTH-type transcriptional repressor NsrR. (131 aa)
SLK21555.1Putative Signal-transduction and transcriptional-control protein. (632 aa)
SLK21586.1Putative Sugar-binding transcriptional regulator,LacI family. (346 aa)
SLK21658.1Putative Transcriptional regulator. (390 aa)
SLK21661.1Putative RNA polymerase sigma factor sigma54. (458 aa)
SLK21693.1Putative Integral membrane sensor signal transduction histidine kinase. (514 aa)
SLK21698.1Putative Regulatory protein VanR. (238 aa)
SLK22060.1Putative Transcription antiterminator, licT family. (282 aa)
SLK22197.1Putative Stage III sporulation protein D. (83 aa)
SLK22269.1Hypothetical protein. (78 aa)
SLK22445.1Putative Transcriptional regulator, GntR family. (242 aa)
rexPutative Redox-sensing transcriptional repressor rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (223 aa)
SLK22503.1Putative Cadmium efflux system accessory protein. (119 aa)
SLK13929.1Hypothetical protein. (64 aa)
SLK14007.1Putative Diguanylate cyclase domain protein. (742 aa)
SLK14217.1Putative transcriptional regulator. (382 aa)
SLK14266.1Putative Transcriptional regulator, ArsR family. (92 aa)
SLK14273.1Putative Two component transcriptional regulator,winged helix family. (232 aa)
SLK14337.1Putative Phosphosugar-binding transcriptional regulator, RpiR family. (267 aa)
SLK14352.1Putative SIS domain protein. (282 aa)
SLK14438.1Hypothetical protein. (88 aa)
SLK14452.1Putative Transcriptional regulator, GntR family. (124 aa)
SLK14481.1Putative Response regulator receiver domain protein. (45 aa)
SLK14495.1Putative Two component transcriptional regulator,AraC family. (359 aa)
SLK14523.1Putative LacI family transcription regulator. (327 aa)
SLK14641.1Putative MerR family transcriptional regulator. (268 aa)
SLK14674.1Hypothetical protein. (89 aa)
SLK14714.1Putative AraC family DNA-binding response regulator. (493 aa)
SLK14743.1Putative transcriptional regulator, PucR family. (303 aa)
SLK14795.1Putative cAMP-binding protein. (229 aa)
SLK14855.1Hypothetical protein. (82 aa)
SLK14875.1Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (304 aa)
SLK14896.1Putative Transcriptional regulator PadR family protein. (121 aa)
SLK15111.1Putative PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein. (618 aa)
SLK15179.1Putative Transcriptional regulator, Fur family; Belongs to the Fur family. (135 aa)
SLK15217.1Putative membrane protein. (204 aa)
SLK15376.1Putative Negative regulator of flagellin synthesis FlgM. (90 aa)
SLK15531.1Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (241 aa)
SLK15560.1Putative Transcriptional regulator. (176 aa)
SLK15654.1Putative Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family. (111 aa)
spoIIABPutative Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. (145 aa)
SLK15659.1Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (251 aa)
hrcAPutative Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (343 aa)
SLK15865.1Putative CBS domain protein. (212 aa)
sigAPutative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (369 aa)
SLK15920.1Putative Transcriptional regulator, LacI family. (331 aa)
SLK16021.1Putative DNA-binding protein. (179 aa)
SLK16028.1Putative Acetyltransferase, gnat family. (365 aa)
birAPutative Biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. (326 aa)
SLK16354.1Putative Transcriptional regulator, LuxR family. (256 aa)
SLK20216.1Putative Glycerol-3-phosphate responsive antiterminator. (185 aa)
SLK20327.1Putative Two-component response regulator. (165 aa)
SLK17811.1Putative transcriptional regulator. (160 aa)
SLK17856.1Putative Transcriptional regulator, DeoR family. (254 aa)
lexAPutative LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (204 aa)
hfqPutative Protein hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. (76 aa)
SLK18101.1Putative Transcriptional regulator. (298 aa)
SLK18202.1Putative SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response). (473 aa)
SLK18343.1PadR family transcriptional regulator. (129 aa)
SLK18351.1Putative Transcriptional regulator, GntR family. (127 aa)
SLK18380.1Putative Transcriptional regulator, TetR family protein. (183 aa)
SLK20346.1Putative sucrose operon repressor. (330 aa)
SLK18482.1Putative Response regulator receiver protein; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. (268 aa)
argRPutative Arginine repressor; Regulates arginine biosynthesis genes. (149 aa)
nusBHypothetical protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (134 aa)
SLK18626.1Putative RNA-binding S4 domain protein. (256 aa)
mraZPutative Protein MraZ; Belongs to the MraZ family. (142 aa)
SLK18806.1Putative Response regulator (CheY-like and AraC-type DNA-binding domain containing protein). (537 aa)
SLK16398.1Putative Two component transcriptional regulator,winged helix family. (220 aa)
SLK19134.1Hypothetical protein. (177 aa)
SLK19224.1Putative Two component transcriptional regulator,winged helix family. (225 aa)
SLK19369.1Hypothetical protein. (90 aa)
SLK19450.1Putative Regulatory protein TetR. (199 aa)
SLK19502.1Putative transcriptional regulatory protein. (243 aa)
SLK19513.1Putative Transcriptional regulator, GntR family/aminotransferase. (467 aa)
SLK19721.1Hypothetical protein. (163 aa)
SLK19730.1Hypothetical protein. (63 aa)
SLK19732.1Putative transcriptional regulator. (124 aa)
SLK19949.1Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (294 aa)
SLK20184.1Potassium transporter TrkA. (209 aa)
tRNA-Gly-1_1Putative Transcriptional regulator, biotin repressor family. (168 aa)
SLK10168.1Putative Transcriptional regulator. (334 aa)
SLK10292.1Hypothetical protein. (193 aa)
SLK10424.1Hypothetical protein. (92 aa)
SLK10585.1Putative HTH-type transcriptional regulator RegA. (332 aa)
SLK10596.1Putative Transcriptional regulator. (138 aa)
SLK10640.1Putative Cyclic nucleotide-binding domain protein. (227 aa)
SLK10776.1Putative Transcriptional regulator, PadR family. (151 aa)
SLK10873.1Putative Purine operon repressor, PurR. (271 aa)
SLK10925.1Putative Transcriptional regulatory protein. (230 aa)
mfdPutative Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1170 aa)
greAPutative Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (160 aa)
SLK11432.1Putative Transcriptional regulator CtsR; Belongs to the CtsR family. (151 aa)
SLK11486.1Putative Transcriptional regulator, GntR family. (240 aa)
SLK11617.1RNA polymerase factor sigma-70. (214 aa)
nusGPutative Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. (173 aa)
SLK12017.1Putative Two component transcriptional regulator,winged helix family. (231 aa)
SLK12042.1Putative arsenate reductase; Belongs to the ArsC family. (116 aa)
SLK12207.1Hypothetical protein; Putative TrpR homolog, YerC/YecD family. (98 aa)
SLK12413.1Putative Transcriptional regulator, ArsR family/dinitrogenase iron-molybdenum cofactor family protein. (127 aa)
SLK12415.1Diguanylate cyclase; Putative Transcriptional regulator, ArsR family/dinitrogenase iron-molybdenum cofactor family protein. (123 aa)
SLK12510.1Putative Transcriptional regulator, RpiR family. (278 aa)
SLK12560.1Hypothetical protein. (124 aa)
SLK12595.1Putative FCD domain protein. (229 aa)
SLK12684.1Putative Response regulator receiver domain protein. (504 aa)
SLK12692.1Putative RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (179 aa)
SLK12926.1Putative Transcriptional regulator, DeoR family. (263 aa)
SLK12946.1Putative Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA component. (147 aa)
SLK13128.1Putative RNA polymerase sigma factor,sigma-70 family. (194 aa)
SLK13145.1Putative Sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. (175 aa)
SLK17650.1Putative Transcriptional regulatory protein. (235 aa)
nusAHypothetical protein; Participates in both transcription termination and antitermination. (369 aa)
codYPutative GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. (258 aa)
SLK17153.1Putative Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (439 aa)
SLK17062.1Putative Sensor histidine kinase. (562 aa)
SLK17060.1Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP; Putative Response regulator (CheY-like receiver and winged helix DNA-binding domain containing protein). (232 aa)
nrdRPutative Transcriptional repressor NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (151 aa)
SLK17043.1Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (259 aa)
SLK17040.1Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (235 aa)
SLK17021.1Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (231 aa)
SLK16972.1Putative transcription regulator; Belongs to the Fur family. (152 aa)
SLK16918.1Putative Rrf2 family protein. (150 aa)
SLK16846.1Putative MarR-family transcriptional regulator. (150 aa)
SLK16413.1Putative transcriptional regulator. (66 aa)
SLK13475.1Putative Transcriptional regulator, MarR family. (535 aa)
SLK13490.1Putative Protein-N(Pi)-phosphohistidine--sugar phosphotransferase. (148 aa)
SLK13511.1Putative PTS modulated transcriptional regulator,MtlR family. (710 aa)
SLK13596.1Putative Transcriptional regulator, MerR family protein. (230 aa)
SLK13686.1Putative Two component transcriptional regulator,winged helix family. (224 aa)
SLK22534.1Hypothetical protein. (336 aa)
SLK22577.1Hypothetical protein. (114 aa)
SLK22614.1Putative DNA-binding response regulator. (225 aa)
SLK22619.1Putative Sigma-54 dependent transcriptional regulator. (462 aa)
SLK22752.1Putative Transcriptional regulatory protein. (145 aa)
SLK22755.1Putative Transcriptional regulatory protein. (59 aa)
SLK22835.1Hypothetical protein. (196 aa)
SLK22836.1Putative transcriptional regulator. (79 aa)
tRNA-Arg-1_5Putative Transcriptional regulator, AraC family. (285 aa)
SLK22982.1Rrf2 family protein, putative transcriptional regulator. (69 aa)
SLK22983.1Rrf2 family protein, putative transcriptional regulator. (59 aa)
SLK22989.1Putative Transcriptional regulator, merR family. (267 aa)
SLK23002.1Transcriptional regulator. (74 aa)
SLK23040.1Putative ATP-dependent protease. (633 aa)
SLK13718.1Putative membrane protein (fragment). (155 aa)
SLK13755.1Putative Transcriptional regulator, PadR-like protein family. (111 aa)
Your Current Organism:
Clostridium chauvoei
NCBI taxonomy Id: 1351755
Other names: C. chauvoei JF4335, Clostridium chauvoei JF4335
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