(13 nodes) Cytosolic ribosome network (Methanococcoides vulcani)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SES67840.1	LSU ribosomal protein L30E. (95 aa)
	rps24e	SSU ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family. (109 aa)
	rps3ae	SSU ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family. (231 aa)
	rps19e	SSU ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (149 aa)
	rpl31e	LSU ribosomal protein L31E; Belongs to the ribosomal protein L31e family. (88 aa)
	rpl15e	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family. (197 aa)
	rpl37ae	LSU ribosomal protein L37AE; Binds to the 23S rRNA. (95 aa)
	rpl24e	LSU ribosomal protein L24E; Binds to the 23S rRNA. (62 aa)
	rps19p	SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (137 aa)
	rpl32e	LSU ribosomal protein L32E; Belongs to the eukaryotic ribosomal protein eL32 family. (148 aa)
	rpl19e	LSU ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (148 aa)
	rps17e	SSU ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family. (64 aa)
	rpl21e	LSU ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family. (98 aa)

Your Current Organism:

Methanococcoides vulcani

NCBI taxonomy Id: 1353158
Other names: DSM 26966, JCM 19278, M. vulcani, Methanococcoides sp. SLH33, strain SLH 33, strain SLH33

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SES67840.1	rpl15e	SAMN04488587_0527	SAMN04488587_1555	LSU ribosomal protein L30E.	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
SES67840.1	rpl19e	SAMN04488587_0527	SAMN04488587_2142	LSU ribosomal protein L30E.	LSU ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
SES67840.1	rpl21e	SAMN04488587_0527	SAMN04488587_2231	LSU ribosomal protein L30E.	LSU ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family.	0.999
SES67840.1	rpl24e	SAMN04488587_0527	SAMN04488587_1585	LSU ribosomal protein L30E.	LSU ribosomal protein L24E; Binds to the 23S rRNA.	0.999
SES67840.1	rpl31e	SAMN04488587_0527	SAMN04488587_1465	LSU ribosomal protein L30E.	LSU ribosomal protein L31E; Belongs to the ribosomal protein L31e family.	0.999
SES67840.1	rpl32e	SAMN04488587_0527	SAMN04488587_2141	LSU ribosomal protein L30E.	LSU ribosomal protein L32E; Belongs to the eukaryotic ribosomal protein eL32 family.	0.999
SES67840.1	rpl37ae	SAMN04488587_0527	SAMN04488587_1564	LSU ribosomal protein L30E.	LSU ribosomal protein L37AE; Binds to the 23S rRNA.	0.999
SES67840.1	rps17e	SAMN04488587_0527	SAMN04488587_2194	LSU ribosomal protein L30E.	SSU ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999
SES67840.1	rps19e	SAMN04488587_0527	SAMN04488587_1461	LSU ribosomal protein L30E.	SSU ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.999
SES67840.1	rps19p	SAMN04488587_0527	SAMN04488587_2128	LSU ribosomal protein L30E.	SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
SES67840.1	rps24e	SAMN04488587_0527	SAMN04488587_1107	LSU ribosomal protein L30E.	SSU ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
SES67840.1	rps3ae	SAMN04488587_0527	SAMN04488587_1142	LSU ribosomal protein L30E.	SSU ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
rpl15e	SES67840.1	SAMN04488587_1555	SAMN04488587_0527	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L30E.	0.999
rpl15e	rpl19e	SAMN04488587_1555	SAMN04488587_2142	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
rpl15e	rpl21e	SAMN04488587_1555	SAMN04488587_2231	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family.	0.999
rpl15e	rpl24e	SAMN04488587_1555	SAMN04488587_1585	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L24E; Binds to the 23S rRNA.	0.999
rpl15e	rpl31e	SAMN04488587_1555	SAMN04488587_1465	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L31E; Belongs to the ribosomal protein L31e family.	0.999
rpl15e	rpl32e	SAMN04488587_1555	SAMN04488587_2141	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L32E; Belongs to the eukaryotic ribosomal protein eL32 family.	0.999
rpl15e	rpl37ae	SAMN04488587_1555	SAMN04488587_1564	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L37AE; Binds to the 23S rRNA.	0.999
rpl15e	rps17e	SAMN04488587_1555	SAMN04488587_2194	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	SSU ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999