STRINGSTRING
A0A165ETK9 A0A165ETK9 A0A165EV98 A0A165EV98 A0A165F358 A0A165F358 A0A165FDZ3 A0A165FDZ3 A0A165FIQ7 A0A165FIQ7 A0A165FLN4 A0A165FLN4 A0A165FQY7 A0A165FQY7 A0A165G5M7 A0A165G5M7 A0A165H1A5 A0A165H1A5 A0A165H2N4 A0A165H2N4 A0A165H6U3 A0A165H6U3 A0A165IDH5 A0A165IDH5 A0A165JCI9 A0A165JCI9 A0A165JTM1 A0A165JTM1 LSM8 LSM8 A0A165K0P6 A0A165K0P6 A0A165KA11 A0A165KA11
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A165ETK9Putative pre-mRNA splicing factor prp1. (922 aa)
A0A165EV98Small nuclear ribonucleoprotein Sm D2. (111 aa)
A0A165F358Calreticulin-domain-containing protein. (1530 aa)
A0A165FDZ3Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (93 aa)
A0A165FIQ7Sm-like ribonucleo protein. (187 aa)
A0A165FLN4SART-1 protein. (785 aa)
A0A165FQY7Sec63-domain-containing protein. (2177 aa)
A0A165G5M7WD40 repeat-like protein. (486 aa)
A0A165H1A5Small nuclear ribo protein F. (88 aa)
A0A165H2N4Nop domain-containing protein. (485 aa)
A0A165H6U3Small nuclear ribonucleoprotein Sm D3. (127 aa)
A0A165IDH5Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; Belongs to the DEAD box helicase family. (724 aa)
A0A165JCI9PRP3-domain-containing protein. (671 aa)
A0A165JTM1RNA-binding domain-containing protein. (175 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A0A165K0P6Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (129 aa)
A0A165KA11Small nuclear ribonucleoprotein G. (77 aa)
Your Current Organism:
Calocera cornea
NCBI taxonomy Id: 1353952
Other names: C. cornea HHB12733, Calocera cornea HHB12733
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