(34 nodes) Basal transcription factors network (Calocera cornea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165CD73	Uncharacterized protein. (338 aa)
	A0A165D0X9	TAF4 domain-containing protein. (439 aa)
	A0A165D7U4	Uncharacterized protein. (611 aa)
	A0A165DBH1	DUF4211 domain-containing protein. (579 aa)
	A0A165DBU3	Uncharacterized protein. (243 aa)
	A0A165DIY4	Uncharacterized protein. (1769 aa)
	A0A165DL70	TFIID and SAGA subunit. (752 aa)
	A0A165DNB4	TFIIE beta domain-containing protein. (229 aa)
	A0A165DX66	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (126 aa)
	A0A165E422	TAFII28-domain-containing protein. (104 aa)
	A0A165E709	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (447 aa)
	A0A165E797	Uncharacterized protein. (55 aa)
	A0A165E7B1	Uncharacterized protein. (294 aa)
	A0A165ELN6	Uncharacterized protein. (191 aa)
	A0A165FMM3	Uncharacterized protein. (347 aa)
	A0A165FN76	Transcription initiation factor IID, 18 kDa subunit. (90 aa)
	A0A165G0Y6	CDK-activating kinase assembly factor. (384 aa)
	A0A165GAS1	Uncharacterized protein. (1101 aa)
	A0A165GDA9	DNA repair helicase. (753 aa)
	A0A165GH75	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (466 aa)
	A0A165GIJ3	DNA repair helicase rad25. (877 aa)
	A0A165GQZ1	Nitroreductase. (209 aa)
	A0A165H2Q3	TAF8_C domain-containing protein. (269 aa)
	A0A165HNX9	TFIID_20kDa domain-containing protein. (424 aa)
	A0A165HXF3	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (360 aa)
	A0A165HY55	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (163 aa)
	A0A165IJM0	TAF-domain-containing protein. (502 aa)
	A0A165IL18	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (710 aa)
	A0A165ISZ5	HTH TFE/IIEalpha-type domain-containing protein. (456 aa)
	A0A165JCV3	Cyclin-like protein; Belongs to the cyclin family. (355 aa)
	A0A165JKX4	Transcription factor Tfb4. (314 aa)
	A0A165JLR9	Uncharacterized protein. (245 aa)
	A0A165K7H4	TFIIB-domain-containing protein. (266 aa)
	A0A165K7M5	HMG box domain-containing protein. (159 aa)

Your Current Organism:

Calocera cornea

NCBI taxonomy Id: 1353952
Other names: C. cornea HHB12733, Calocera cornea HHB12733

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165CD73	A0A165D0X9	Uncharacterized protein.	TAF4 domain-containing protein.	0.924
A0A165CD73	A0A165D7U4	Uncharacterized protein.	Uncharacterized protein.	0.967
A0A165CD73	A0A165DBH1	Uncharacterized protein.	DUF4211 domain-containing protein.	0.819
A0A165CD73	A0A165DBU3	Uncharacterized protein.	Uncharacterized protein.	0.957
A0A165CD73	A0A165DIY4	Uncharacterized protein.	Uncharacterized protein.	0.919
A0A165CD73	A0A165DL70	Uncharacterized protein.	TFIID and SAGA subunit.	0.895
A0A165CD73	A0A165DNB4	Uncharacterized protein.	TFIIE beta domain-containing protein.	0.990
A0A165CD73	A0A165DX66	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.977
A0A165CD73	A0A165E422	Uncharacterized protein.	TAFII28-domain-containing protein.	0.902
A0A165CD73	A0A165E709	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.965
A0A165CD73	A0A165E797	Uncharacterized protein.	Uncharacterized protein.	0.711
A0A165CD73	A0A165E7B1	Uncharacterized protein.	Uncharacterized protein.	0.711
A0A165CD73	A0A165ELN6	Uncharacterized protein.	Uncharacterized protein.	0.890
A0A165CD73	A0A165FMM3	Uncharacterized protein.	Uncharacterized protein.	0.760
A0A165CD73	A0A165FN76	Uncharacterized protein.	Transcription initiation factor IID, 18 kDa subunit.	0.877
A0A165CD73	A0A165G0Y6	Uncharacterized protein.	CDK-activating kinase assembly factor.	0.976
A0A165CD73	A0A165GAS1	Uncharacterized protein.	Uncharacterized protein.	0.842
A0A165CD73	A0A165GDA9	Uncharacterized protein.	DNA repair helicase.	0.966
A0A165CD73	A0A165GH75	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.976
A0A165CD73	A0A165GIJ3	Uncharacterized protein.	DNA repair helicase rad25.	0.978