(28 nodes) Helicase superfamily 1/2, ATP-binding domain network (Ordospora colligata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M896_040130	HrpA-like helicase. (784 aa)
	M896_070280	ATP-dependent RNA helicase DBP10. (462 aa)
	M896_081060	ATP-dependent RNA helicase. (433 aa)
	M896_080800	Ski2-like helicase. (1067 aa)
	M896_050600	HrpA-like helicase. (813 aa)
	M896_091080	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (496 aa)
	M896_081100	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (737 aa)
	M896_110350	DNA/RNA helicase. (876 aa)
	M896_110070	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (472 aa)
	M896_120730	HrpA-like helicase. (665 aa)
	M896_021550	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (417 aa)
	M896_021500	Putative DEAD-box helicase. (424 aa)
	M896_050610	RNA helicase. (466 aa)
	M896_051900	Putative ATP-dependent RNA helicase. (424 aa)
	M896_051250	SNF2-like helicase. (814 aa)
	M896_020240	Dead box helicase; Belongs to the DEAD box helicase family. (521 aa)
	M896_011570	Putative superfamily II RNA helicase. (1360 aa)
	M896_010200	DEAD-like helicase. (1241 aa)
	M896_010960	Rad25-like DNA repair helicase. (663 aa)
	M896_041750	Superfamily II RNA helicase. (888 aa)
	M896_051690	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (459 aa)
	M896_030190	Snf2-like DNA/RNA helicase. (1265 aa)
	M896_040690	HrpA-like helicase. (593 aa)
	M896_050380	ATP-dependent rRNA helicase; Belongs to the DEAD box helicase family. (403 aa)
	M896_060910	Pre-mRNA splicing helicase. (1513 aa)
	M896_060800	Snf2/Rad54-like helicase. (543 aa)
	M896_041350	Superfamily II RNA helicase. (953 aa)
	M896_040410	Superfamily II DNA/RNA helicase. (703 aa)

Your Current Organism:

Ordospora colligata

NCBI taxonomy Id: 1354746
Other names: O. colligata OC4, Ordospora colligata OC4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M896_010200	M896_010960	A0A0B2UM79	A0A0B2UM60	DEAD-like helicase.	Rad25-like DNA repair helicase.	0.515
M896_010200	M896_020240	A0A0B2UM79	A0A0B2UMJ9	DEAD-like helicase.	Dead box helicase; Belongs to the DEAD box helicase family.	0.480
M896_010200	M896_021500	A0A0B2UM79	A0A0B2UGX9	DEAD-like helicase.	Putative DEAD-box helicase.	0.480
M896_010200	M896_021550	A0A0B2UM79	A0A0B2UGY5	DEAD-like helicase.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.527
M896_010200	M896_050380	A0A0B2UM79	A0A0B2UKS4	DEAD-like helicase.	ATP-dependent rRNA helicase; Belongs to the DEAD box helicase family.	0.480
M896_010200	M896_050610	A0A0B2UM79	A0A0B2UK94	DEAD-like helicase.	RNA helicase.	0.480
M896_010200	M896_051250	A0A0B2UM79	A0A0B2UF85	DEAD-like helicase.	SNF2-like helicase.	0.583
M896_010200	M896_051690	A0A0B2UM79	A0A0B2ULD4	DEAD-like helicase.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.530
M896_010200	M896_051900	A0A0B2UM79	A0A0B2UFF8	DEAD-like helicase.	Putative ATP-dependent RNA helicase.	0.480
M896_010200	M896_070280	A0A0B2UM79	A0A0B2UK88	DEAD-like helicase.	ATP-dependent RNA helicase DBP10.	0.480
M896_010200	M896_081100	A0A0B2UM79	A0A0B2UJH3	DEAD-like helicase.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.513
M896_010200	M896_091080	A0A0B2UM79	A0A0B2UJM1	DEAD-like helicase.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.480
M896_010200	M896_110070	A0A0B2UM79	A0A0B2UIB1	DEAD-like helicase.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.822
M896_010960	M896_010200	A0A0B2UM60	A0A0B2UM79	Rad25-like DNA repair helicase.	DEAD-like helicase.	0.515
M896_010960	M896_040410	A0A0B2UM60	A0A0B2UKI2	Rad25-like DNA repair helicase.	Superfamily II DNA/RNA helicase.	0.823
M896_010960	M896_051250	A0A0B2UM60	A0A0B2UF85	Rad25-like DNA repair helicase.	SNF2-like helicase.	0.555
M896_010960	M896_060800	A0A0B2UM60	A0A0B2UKP5	Rad25-like DNA repair helicase.	Snf2/Rad54-like helicase.	0.515
M896_010960	M896_110350	A0A0B2UM60	A0A0B2UJ44	Rad25-like DNA repair helicase.	DNA/RNA helicase.	0.521
M896_011570	M896_020240	A0A0B2UMA9	A0A0B2UMJ9	Putative superfamily II RNA helicase.	Dead box helicase; Belongs to the DEAD box helicase family.	0.586
M896_011570	M896_021500	A0A0B2UMA9	A0A0B2UGX9	Putative superfamily II RNA helicase.	Putative DEAD-box helicase.	0.520