(105 nodes) GTP hydrolysis and joining of the 60S ribosomal subunit network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps-16	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	rps-29	Ribosomal protein S29. (56 aa)
	CAEBREN_02203	Epimerase domain-containing protein. (343 aa)
	Cbn-rpl-11.2	CBN-RPL-11.2 protein; Belongs to the universal ribosomal protein uL5 family. (196 aa)
	CAEBREN_29065	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (147 aa)
	CAEBREN_24098	Uncharacterized protein. (1567 aa)
	Cbn-rpl-3	CBN-RPL-3 protein; Belongs to the universal ribosomal protein uL3 family. (401 aa)
	Cbn-rps-1	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (257 aa)
	rps-0	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (276 aa)
	CAEBREN_21308	Uncharacterized protein. (189 aa)
	Cbn-rpl-35	CBN-RPL-35 protein. (123 aa)
	Cbn-rps-6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (246 aa)
	Cbn-iff-1	Eukaryotic translation initiation factor 5A. (162 aa)
	CAEBREN_07460	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	Cbn-rpl-7	CBN-RPL-7 protein. (278 aa)
	Cbn-rpl-4	CBN-RPL-4 protein. (345 aa)
	Cbn-rpl-23	CBN-RPL-23 protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	Cbn-rps-12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (140 aa)
	CAEBREN_08414	Uncharacterized protein. (130 aa)
	Cbn-rpl-43	CBN-RPL-43 protein. (91 aa)
	Cbn-rps-30	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (130 aa)
	CAEBREN_05470	Ribosomal_L28e domain-containing protein. (126 aa)
	Cbn-rps-9	CBN-RPS-9 protein; Belongs to the universal ribosomal protein uS4 family. (189 aa)
	Cbn-rpl-41	CBN-RPL-41 protein; Belongs to the eukaryotic ribosomal protein eL42 family. (105 aa)
	CAEBREN_13019	FHA domain-containing protein. (368 aa)
	Cbn-ubl-1	CBN-UBL-1 protein. (163 aa)
	CAEBREN_14825	Uncharacterized protein. (182 aa)
	Cbn-rpl-2	CBN-RPL-2 protein. (260 aa)
	Cbn-rps-3	CBN-RPS-3 protein; Belongs to the universal ribosomal protein uS3 family. (246 aa)
	CAEBREN_23136	Uncharacterized protein. (626 aa)
	Cbn-rpl-21	CBN-RPL-21 protein. (161 aa)
	Cbn-rpl-6	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (217 aa)
	Cbn-rps-21	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (88 aa)
	Cbn-rpl-36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (104 aa)
	Cbn-rps-14	CBN-RPS-14 protein; Belongs to the universal ribosomal protein uS11 family. (152 aa)
	CAEBREN_29425	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	Cbn-rpl-18	CBN-RPL-18 protein. (188 aa)
	CAEBREN_06861	Uncharacterized protein. (65 aa)
	CAEBREN_01828	Ribosomal protein L37; Binds to the 23S rRNA. (92 aa)
	CAEBREN_09959	Uncharacterized protein. (123 aa)
	inx-7	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (554 aa)
	CAEBREN_04377	Uncharacterized protein. (83 aa)
	Cbn-rps-22	CBN-RPS-22 protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	Cbn-rps-20	CBN-RPS-20 protein. (117 aa)
	CAEBREN_32864	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (151 aa)
	CAEBREN_19650	Ribosomal_L18_c domain-containing protein. (293 aa)
	CAEBREN_20463	Uncharacterized protein. (161 aa)
	CAEBREN_23880	Ribosomal_L18_c domain-containing protein. (86 aa)
	Cbn-rpl-31	CBN-RPL-31 protein. (122 aa)
	CAEBREN_05850	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (118 aa)
	Cbn-rpl-13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (207 aa)
	Cbn-rps-17	CBN-RPS-17 protein. (130 aa)
	CAEBREN_04311	WD_REPEATS_REGION domain-containing protein. (346 aa)
	Cbn-rpl-25.2	CBN-RPL-25.2 protein; Belongs to the universal ribosomal protein uL23 family. (146 aa)
	Cbn-rpl-32	CBN-RPL-32 protein. (134 aa)
	CAEBREN_03479	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (117 aa)
	CAEBREN_10320	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (107 aa)
	CAEBREN_04140	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (102 aa)
	CAEBREN_17964	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	CAEBREN_04079	Uncharacterized protein. (88 aa)
	Cbn-ubq-2	CBN-UBQ-2 protein. (128 aa)
	Cbn-rpl-12	CBN-RPL-12 protein; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	CAEBREN_18508	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (155 aa)
	Cbn-rack-1	CBN-RACK-1 protein. (325 aa)
	CAEBREN_00931	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (151 aa)
	inx-14	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (554 aa)
	CAEBREN_06134	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (117 aa)
	CAEBREN_13637	Ribosomal_L7Ae domain-containing protein. (115 aa)
	CAEBREN_11107	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	Cbn-rps-24	CBN-RPS-24 protein. (131 aa)
	Cbn-rps-23	CBN-RPS-23 protein; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	CAEBREN_18236	S4 RNA-binding domain-containing protein. (152 aa)
	CAEBREN_13899	Uncharacterized protein. (196 aa)
	CAEBREN_14338	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (186 aa)
	Cbn-rpl-17	CBN-RPL-17 protein; Belongs to the universal ribosomal protein uL22 family. (127 aa)
	CAEBREN_21531	Uncharacterized protein. (53 aa)
	Cbn-rps-2	CBN-RPS-2 protein; Belongs to the universal ribosomal protein uS5 family. (273 aa)
	CAEBREN_22191	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (180 aa)
	Cbn-rps-4	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (259 aa)
	CAEBREN_24295	Ribosomal_S7 domain-containing protein. (222 aa)
	CAEBREN_11468	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
	Cbn-rpl-10	CBN-RPL-10 protein. (214 aa)
	CAEBREN_22575	Ig-like domain-containing protein. (379 aa)
	Cbn-rpl-14	CBN-RPL-14 protein. (135 aa)
	CAEBREN_20727	Ubiquitin-like domain-containing protein. (138 aa)
	CAEBREN_04741	Uncharacterized protein. (146 aa)
	CAEBREN_29616	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (195 aa)
	CAEBREN_13817	S10_plectin domain-containing protein. (149 aa)
	Cbn-rpl-15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	CAEBREN_05980	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (210 aa)
	CAEBREN_01166	Tr-type G domain-containing protein. (852 aa)
	CAEBREN_09216	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (111 aa)
	Cbn-rps-8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
	Cbn-rpl-26	CBN-RPL-26 protein. (142 aa)
	CAEBREN_10179	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (198 aa)
	CAEBREN_24467	Ribosomal protein L37; Binds to the 23S rRNA. (119 aa)
	CAEBREN_03513	Uncharacterized protein. (110 aa)
	Cbn-eif-1.A	CBN-EIF-1.A protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (216 aa)
	CAEBREN_29009	Uncharacterized protein. (229 aa)
	CAEBREN_05853	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (196 aa)
	Cbn-rpl-20	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (196 aa)
	CAEBREN_05949	Uncharacterized protein. (116 aa)
	CAEBREN_29493	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
	CAEBREN_04317	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (145 aa)
	Cbn-rpl-24.1	CBN-RPL-24.1 protein. (159 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00931	CAEBREN_01166	G0NUV9	G0PBA1	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Tr-type G domain-containing protein.	0.991
CAEBREN_00931	CAEBREN_01828	G0NUV9	G0N722	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.997
CAEBREN_00931	CAEBREN_02203	G0NUV9	G0M6K7	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Epimerase domain-containing protein.	0.999
CAEBREN_00931	CAEBREN_03479	G0NUV9	G0NPH4	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
CAEBREN_00931	CAEBREN_03513	G0NUV9	G0PHL5	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
CAEBREN_00931	CAEBREN_04079	G0NUV9	G0NRQ3	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
CAEBREN_00931	CAEBREN_04140	G0NUV9	G0NQB2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	0.995
CAEBREN_00931	CAEBREN_04311	G0NUV9	G0NLA3	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	WD_REPEATS_REGION domain-containing protein.	0.996
CAEBREN_00931	CAEBREN_04317	G0NUV9	G0PMZ5	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.999
CAEBREN_00931	CAEBREN_04377	G0NUV9	G0NBK4	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
CAEBREN_00931	CAEBREN_04741	G0NUV9	G0P8N2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
CAEBREN_00931	CAEBREN_05470	G0NUV9	G0MTY3	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_L28e domain-containing protein.	0.999
CAEBREN_00931	CAEBREN_05850	G0NUV9	G0NFQ9	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
CAEBREN_00931	CAEBREN_05853	G0NUV9	G0PJ14	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.998
CAEBREN_00931	CAEBREN_05949	G0NUV9	G0PL25	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.998
CAEBREN_00931	CAEBREN_05980	G0NUV9	G0PB51	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
CAEBREN_00931	CAEBREN_06134	G0NUV9	G0NVZ9	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
CAEBREN_00931	CAEBREN_06861	G0NUV9	G0N6K2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
CAEBREN_00931	CAEBREN_07460	G0NUV9	G0MLQ9	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
CAEBREN_00931	CAEBREN_08414	G0NUV9	G0MPU7	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999

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