(38 nodes) GTP hydrolysis and joining of the 60S ribosomal subunit network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps-29	Ribosomal protein S29. (56 aa)
	rps-0	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (276 aa)
	Cbn-rps-6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (246 aa)
	Cbn-rpl-7	CBN-RPL-7 protein. (278 aa)
	Cbn-rps-9	CBN-RPS-9 protein; Belongs to the universal ribosomal protein uS4 family. (189 aa)
	CAEBREN_13019	FHA domain-containing protein. (368 aa)
	CAEBREN_14825	Uncharacterized protein. (182 aa)
	Cbn-rpl-21	CBN-RPL-21 protein. (161 aa)
	Cbn-rps-14	CBN-RPS-14 protein; Belongs to the universal ribosomal protein uS11 family. (152 aa)
	CAEBREN_06861	Uncharacterized protein. (65 aa)
	CAEBREN_09959	Uncharacterized protein. (123 aa)
	CAEBREN_04377	Uncharacterized protein. (83 aa)
	Cbn-rps-20	CBN-RPS-20 protein. (117 aa)
	CAEBREN_32864	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (151 aa)
	Cbn-rpl-31	CBN-RPL-31 protein. (122 aa)
	CAEBREN_05850	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (118 aa)
	Cbn-rps-17	CBN-RPS-17 protein. (130 aa)
	Cbn-rpl-25.2	CBN-RPL-25.2 protein; Belongs to the universal ribosomal protein uL23 family. (146 aa)
	CAEBREN_04079	Uncharacterized protein. (88 aa)
	CAEBREN_06134	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (117 aa)
	CAEBREN_13637	Ribosomal_L7Ae domain-containing protein. (115 aa)
	Cbn-rps-24	CBN-RPS-24 protein. (131 aa)
	Cbn-rps-23	CBN-RPS-23 protein; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	CAEBREN_14338	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (186 aa)
	Cbn-rps-2	CBN-RPS-2 protein; Belongs to the universal ribosomal protein uS5 family. (273 aa)
	CAEBREN_11468	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
	Cbn-rpl-10	CBN-RPL-10 protein. (214 aa)
	CAEBREN_20727	Ubiquitin-like domain-containing protein. (138 aa)
	CAEBREN_04741	Uncharacterized protein. (146 aa)
	CAEBREN_29616	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (195 aa)
	CAEBREN_13817	S10_plectin domain-containing protein. (149 aa)
	CAEBREN_05980	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (210 aa)
	Cbn-rps-8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
	CAEBREN_10179	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (198 aa)
	CAEBREN_24467	Ribosomal protein L37; Binds to the 23S rRNA. (119 aa)
	CAEBREN_03513	Uncharacterized protein. (110 aa)
	CAEBREN_05853	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (196 aa)
	CAEBREN_04317	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (145 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_03513	CAEBREN_04079	G0PHL5	G0NRQ3	Uncharacterized protein.	Uncharacterized protein.	0.997
CAEBREN_03513	CAEBREN_04317	G0PHL5	G0PMZ5	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.999
CAEBREN_03513	CAEBREN_04377	G0PHL5	G0NBK4	Uncharacterized protein.	Uncharacterized protein.	0.999
CAEBREN_03513	CAEBREN_04741	G0PHL5	G0P8N2	Uncharacterized protein.	Uncharacterized protein.	0.999
CAEBREN_03513	CAEBREN_05850	G0PHL5	G0NFQ9	Uncharacterized protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.997
CAEBREN_03513	CAEBREN_05853	G0PHL5	G0PJ14	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.999
CAEBREN_03513	CAEBREN_05980	G0PHL5	G0PB51	Uncharacterized protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
CAEBREN_03513	CAEBREN_06134	G0PHL5	G0NVZ9	Uncharacterized protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
CAEBREN_03513	CAEBREN_06861	G0PHL5	G0N6K2	Uncharacterized protein.	Uncharacterized protein.	0.999
CAEBREN_03513	CAEBREN_09959	G0PHL5	G0N9R0	Uncharacterized protein.	Uncharacterized protein.	0.999
CAEBREN_03513	CAEBREN_10179	G0PHL5	G0PFX1	Uncharacterized protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
CAEBREN_03513	CAEBREN_11468	G0PHL5	G0P4Y0	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
CAEBREN_03513	CAEBREN_13019	G0PHL5	G0MVF7	Uncharacterized protein.	FHA domain-containing protein.	0.998
CAEBREN_03513	CAEBREN_13637	G0PHL5	G0NXX8	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.999
CAEBREN_03513	CAEBREN_13817	G0PHL5	G0P989	Uncharacterized protein.	S10_plectin domain-containing protein.	0.999
CAEBREN_03513	CAEBREN_14338	G0PHL5	G0P0S9	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
CAEBREN_03513	CAEBREN_14825	G0PHL5	G0MZT3	Uncharacterized protein.	Uncharacterized protein.	0.998
CAEBREN_03513	CAEBREN_20727	G0PHL5	G0P7V1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.998
CAEBREN_03513	CAEBREN_24467	G0PHL5	G0PH15	Uncharacterized protein.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
CAEBREN_03513	CAEBREN_29616	G0PHL5	G0P8S4	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.999

page 1 of 71

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About