(6 nodes) Mixed, incl. Cytoplasmic side of rough endoplasmic reticulum membrane, and Ribosomal protein S5/S7 network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_06861	Uncharacterized protein. (65 aa)
	CAEBREN_04377	Uncharacterized protein. (83 aa)
	CAEBREN_05850	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (118 aa)
	CAEBREN_11468	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
	CAEBREN_04741	Uncharacterized protein. (146 aa)
	CAEBREN_05980	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (210 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_04377	CAEBREN_04741	G0NBK4	G0P8N2	Uncharacterized protein.	Uncharacterized protein.	0.999
CAEBREN_04377	CAEBREN_05850	G0NBK4	G0NFQ9	Uncharacterized protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
CAEBREN_04377	CAEBREN_05980	G0NBK4	G0PB51	Uncharacterized protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
CAEBREN_04377	CAEBREN_06861	G0NBK4	G0N6K2	Uncharacterized protein.	Uncharacterized protein.	0.999
CAEBREN_04377	CAEBREN_11468	G0NBK4	G0P4Y0	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
CAEBREN_04741	CAEBREN_04377	G0P8N2	G0NBK4	Uncharacterized protein.	Uncharacterized protein.	0.999
CAEBREN_04741	CAEBREN_05850	G0P8N2	G0NFQ9	Uncharacterized protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
CAEBREN_04741	CAEBREN_05980	G0P8N2	G0PB51	Uncharacterized protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
CAEBREN_04741	CAEBREN_06861	G0P8N2	G0N6K2	Uncharacterized protein.	Uncharacterized protein.	0.999
CAEBREN_04741	CAEBREN_11468	G0P8N2	G0P4Y0	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
CAEBREN_05850	CAEBREN_04377	G0NFQ9	G0NBK4	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	Uncharacterized protein.	0.999
CAEBREN_05850	CAEBREN_04741	G0NFQ9	G0P8N2	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	Uncharacterized protein.	0.999
CAEBREN_05850	CAEBREN_05980	G0NFQ9	G0PB51	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
CAEBREN_05850	CAEBREN_06861	G0NFQ9	G0N6K2	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	Uncharacterized protein.	0.999
CAEBREN_05850	CAEBREN_11468	G0NFQ9	G0P4Y0	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
CAEBREN_05980	CAEBREN_04377	G0PB51	G0NBK4	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	Uncharacterized protein.	0.999
CAEBREN_05980	CAEBREN_04741	G0PB51	G0P8N2	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	Uncharacterized protein.	0.999
CAEBREN_05980	CAEBREN_05850	G0PB51	G0NFQ9	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
CAEBREN_05980	CAEBREN_06861	G0PB51	G0N6K2	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	Uncharacterized protein.	0.999
CAEBREN_05980	CAEBREN_11468	G0PB51	G0P4Y0	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999

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