(13 nodes) Mixed, incl. Mitochondrial termination factor repeats, and DUSP-like superfamily network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_22451	Uncharacterized protein. (295 aa)
	CAEBREN_01533	Uncharacterized protein. (195 aa)
	CAEBREN_12447	Uncharacterized protein. (425 aa)
	CAEBREN_31856	Uncharacterized protein. (996 aa)
	CAEBREN_20107	Uncharacterized protein. (320 aa)
	CAEBREN_17522	RRM domain-containing protein. (115 aa)
	CAEBREN_12999	Uncharacterized protein. (402 aa)
	CAEBREN_02253	DUSP domain-containing protein. (252 aa)
	CAEBREN_30421	Uncharacterized protein. (742 aa)
	CAEBREN_32475	USP domain-containing protein. (220 aa)
	CAEBREN_31934	USP domain-containing protein; Belongs to the peptidase C19 family. (227 aa)
	CAEBREN_19011	Ubiquitin carboxyl-terminal hydrolase. (902 aa)
	CAEBREN_31045	Uncharacterized protein. (402 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_01533	CAEBREN_02253	G0MI73	G0P8X9	Uncharacterized protein.	DUSP domain-containing protein.	0.553
CAEBREN_01533	CAEBREN_19011	G0MI73	G0PF26	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.553
CAEBREN_01533	CAEBREN_20107	G0MI73	G0N0K6	Uncharacterized protein.	Uncharacterized protein.	0.718
CAEBREN_01533	CAEBREN_22451	G0MI73	G0MBY5	Uncharacterized protein.	Uncharacterized protein.	0.718
CAEBREN_01533	CAEBREN_31934	G0MI73	G0PF24	Uncharacterized protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.553
CAEBREN_01533	CAEBREN_32475	G0MI73	G0PCJ2	Uncharacterized protein.	USP domain-containing protein.	0.553
CAEBREN_02253	CAEBREN_01533	G0P8X9	G0MI73	DUSP domain-containing protein.	Uncharacterized protein.	0.553
CAEBREN_02253	CAEBREN_12447	G0P8X9	G0MPI4	DUSP domain-containing protein.	Uncharacterized protein.	0.532
CAEBREN_02253	CAEBREN_12999	G0P8X9	G0NPT1	DUSP domain-containing protein.	Uncharacterized protein.	0.530
CAEBREN_02253	CAEBREN_17522	G0P8X9	G0NKH0	DUSP domain-containing protein.	RRM domain-containing protein.	0.458
CAEBREN_02253	CAEBREN_20107	G0P8X9	G0N0K6	DUSP domain-containing protein.	Uncharacterized protein.	0.521
CAEBREN_02253	CAEBREN_22451	G0P8X9	G0MBY5	DUSP domain-containing protein.	Uncharacterized protein.	0.553
CAEBREN_02253	CAEBREN_31045	G0P8X9	G0PLU8	DUSP domain-containing protein.	Uncharacterized protein.	0.530
CAEBREN_12447	CAEBREN_02253	G0MPI4	G0P8X9	Uncharacterized protein.	DUSP domain-containing protein.	0.532
CAEBREN_12447	CAEBREN_19011	G0MPI4	G0PF26	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.532
CAEBREN_12447	CAEBREN_31934	G0MPI4	G0PF24	Uncharacterized protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.532
CAEBREN_12447	CAEBREN_32475	G0MPI4	G0PCJ2	Uncharacterized protein.	USP domain-containing protein.	0.532
CAEBREN_12999	CAEBREN_02253	G0NPT1	G0P8X9	Uncharacterized protein.	DUSP domain-containing protein.	0.530
CAEBREN_12999	CAEBREN_17522	G0NPT1	G0NKH0	Uncharacterized protein.	RRM domain-containing protein.	0.701
CAEBREN_12999	CAEBREN_19011	G0NPT1	G0PF26	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.530

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