(15 nodes) Mixed, incl. Protein kinase D signaling, and Small GTPase, Ras-type network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-pxd-1	CBN-PXD-1 protein. (503 aa)
	CAEBREN_20621	Uncharacterized protein. (637 aa)
	CAEBREN_28402	G_PROTEIN_RECEP_F1_2 domain-containing protein. (375 aa)
	CAEBREN_25133	Uncharacterized protein. (82 aa)
	CAEBREN_23719	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. (202 aa)
	CAEBREN_32537	Uncharacterized protein. (738 aa)
	CAEBREN_05295	Uncharacterized protein. (172 aa)
	CAEBREN_31757	Protein kinase domain-containing protein. (195 aa)
	CAEBREN_11692	Uncharacterized protein. (623 aa)
	CAEBREN_10708	G_PROTEIN_RECEP_F1_2 domain-containing protein. (407 aa)
	CAEBREN_28859	Uncharacterized protein. (725 aa)
	CAEBREN_31168	G_PROTEIN_RECEP_F1_2 domain-containing protein. (377 aa)
	CAEBREN_03312	Protein kinase domain-containing protein. (536 aa)
	CAEBREN_25230	Uncharacterized protein. (741 aa)
	CAEBREN_03603	Uncharacterized protein. (125 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_03312	CAEBREN_03603	G0P3F1	G0PBF4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.605
CAEBREN_03312	CAEBREN_05295	G0P3F1	G0NHB6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.526
CAEBREN_03312	CAEBREN_25230	G0P3F1	G0P3F2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.900
CAEBREN_03312	CAEBREN_28859	G0P3F1	G0NPG4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.692
CAEBREN_03312	CAEBREN_31757	G0P3F1	G0NHB7	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.526
CAEBREN_03312	CAEBREN_32537	G0P3F1	G0NFP9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.691
CAEBREN_03603	CAEBREN_03312	G0PBF4	G0P3F1	Uncharacterized protein.	Protein kinase domain-containing protein.	0.605
CAEBREN_03603	CAEBREN_10708	G0PBF4	G0NLE6	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.795
CAEBREN_03603	CAEBREN_20621	G0PBF4	G0MGT3	Uncharacterized protein.	Uncharacterized protein.	0.893
CAEBREN_03603	CAEBREN_23719	G0PBF4	G0N5E3	Uncharacterized protein.	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	0.752
CAEBREN_03603	CAEBREN_25133	G0PBF4	G0N5E2	Uncharacterized protein.	Uncharacterized protein.	0.752
CAEBREN_03603	CAEBREN_25230	G0PBF4	G0P3F2	Uncharacterized protein.	Uncharacterized protein.	0.605
CAEBREN_03603	CAEBREN_28402	G0PBF4	G0MJX4	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.892
CAEBREN_03603	CAEBREN_28859	G0PBF4	G0NPG4	Uncharacterized protein.	Uncharacterized protein.	0.605
CAEBREN_03603	CAEBREN_31168	G0PBF4	G0NQ06	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.795
CAEBREN_03603	CAEBREN_32537	G0PBF4	G0NFP9	Uncharacterized protein.	Uncharacterized protein.	0.605
CAEBREN_03603	Cbn-pxd-1	G0PBF4	G0MBY0	Uncharacterized protein.	CBN-PXD-1 protein.	0.907
CAEBREN_05295	CAEBREN_03312	G0NHB6	G0P3F1	Uncharacterized protein.	Protein kinase domain-containing protein.	0.526
CAEBREN_05295	CAEBREN_25230	G0NHB6	G0P3F2	Uncharacterized protein.	Uncharacterized protein.	0.526
CAEBREN_10708	CAEBREN_03603	G0NLE6	G0PBF4	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.795

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