(10 nodes) Mixed, incl. Dsl1/NZR complex, and Membrane fusion protein Use1 network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-use-1	CBN-USE-1 protein. (251 aa)
	Cbn-smgl-1	CBN-SMGL-1 protein. (1606 aa)
	CAEBREN_25886	Uncharacterized protein. (847 aa)
	CAEBREN_04637	PX domain-containing protein. (203 aa)
	CAEBREN_06808	Uncharacterized protein. (234 aa)
	CAEBREN_21760	Ribosomal protein S6 kinase. (841 aa)
	CAEBREN_32270	Uncharacterized protein. (251 aa)
	CAEBREN_28927	Uncharacterized protein. (1456 aa)
	CAEBREN_31591	Uncharacterized protein. (93 aa)
	Cbn-rskn-1	Ribosomal protein S6 kinase. (785 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_04637	CAEBREN_06808	G0MP79	G0MYP8	PX domain-containing protein.	Uncharacterized protein.	0.444
CAEBREN_04637	CAEBREN_21760	G0MP79	G0NK67	PX domain-containing protein.	Ribosomal protein S6 kinase.	0.444
CAEBREN_04637	CAEBREN_25886	G0MP79	G0MP72	PX domain-containing protein.	Uncharacterized protein.	0.673
CAEBREN_04637	CAEBREN_28927	G0MP79	G0PBP3	PX domain-containing protein.	Uncharacterized protein.	0.905
CAEBREN_04637	CAEBREN_31591	G0MP79	G0PBP4	PX domain-containing protein.	Uncharacterized protein.	0.905
CAEBREN_04637	CAEBREN_32270	G0MP79	G0P8J9	PX domain-containing protein.	Uncharacterized protein.	0.966
CAEBREN_04637	Cbn-rskn-1	G0MP79	G0PGW0	PX domain-containing protein.	Ribosomal protein S6 kinase.	0.444
CAEBREN_04637	Cbn-smgl-1	G0MP79	G0MFH7	PX domain-containing protein.	CBN-SMGL-1 protein.	0.905
CAEBREN_04637	Cbn-use-1	G0MP79	G0MF50	PX domain-containing protein.	CBN-USE-1 protein.	0.966
CAEBREN_06808	CAEBREN_04637	G0MYP8	G0MP79	Uncharacterized protein.	PX domain-containing protein.	0.444
CAEBREN_06808	CAEBREN_25886	G0MYP8	G0MP72	Uncharacterized protein.	Uncharacterized protein.	0.444
CAEBREN_06808	CAEBREN_28927	G0MYP8	G0PBP3	Uncharacterized protein.	Uncharacterized protein.	0.873
CAEBREN_06808	CAEBREN_31591	G0MYP8	G0PBP4	Uncharacterized protein.	Uncharacterized protein.	0.873
CAEBREN_06808	CAEBREN_32270	G0MYP8	G0P8J9	Uncharacterized protein.	Uncharacterized protein.	0.996
CAEBREN_06808	Cbn-smgl-1	G0MYP8	G0MFH7	Uncharacterized protein.	CBN-SMGL-1 protein.	0.873
CAEBREN_06808	Cbn-use-1	G0MYP8	G0MF50	Uncharacterized protein.	CBN-USE-1 protein.	0.996
CAEBREN_21760	CAEBREN_04637	G0NK67	G0MP79	Ribosomal protein S6 kinase.	PX domain-containing protein.	0.444
CAEBREN_21760	CAEBREN_25886	G0NK67	G0MP72	Ribosomal protein S6 kinase.	Uncharacterized protein.	0.456
CAEBREN_21760	CAEBREN_28927	G0NK67	G0PBP3	Ribosomal protein S6 kinase.	Uncharacterized protein.	0.836
CAEBREN_21760	CAEBREN_31591	G0NK67	G0PBP4	Ribosomal protein S6 kinase.	Uncharacterized protein.	0.836

page 1 of 4

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About