(41 nodes) Phagophore assembly site, and Autophagy network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lgg	Protein lgg. (130 aa)
	Cbn-atg-16.1	CBN-ATG-16.1 protein. (525 aa)
	CAEBREN_19160	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (288 aa)
	CAEBREN_09070	Uncharacterized protein. (334 aa)
	CAEBREN_22760	Uncharacterized protein. (285 aa)
	CAEBREN_24261	Uncharacterized protein. (429 aa)
	CAEBREN_12047	Uncharacterized protein. (283 aa)
	CAEBREN_16502	N_BRCA1_IG domain-containing protein. (239 aa)
	CAEBREN_11641	Uncharacterized protein. (350 aa)
	Cbn-atg-5	Autophagy protein 5; Involved in autophagic vesicle formation. (280 aa)
	Cbn-lgg-3	CBN-LGG-3 protein; Ubiquitin-like protein involved in autophagic vesicle formation. (130 aa)
	CAEBREN_16840	Uncharacterized protein. (2287 aa)
	CAEBREN_13995	Uncharacterized protein. (143 aa)
	lgg-2	Protein lgg. (123 aa)
	CAEBREN_20867	Uncharacterized protein. (230 aa)
	CAEBREN_06907	Protein kinase domain-containing protein. (770 aa)
	Cbn-unc-51	CBN-UNC-51 protein. (858 aa)
	CAEBREN_25303	Autophagy_act_C domain-containing protein. (182 aa)
	CAEBREN_29841	Uncharacterized protein. (103 aa)
	CAEBREN_22247	ATG11 domain-containing protein. (1385 aa)
	Cbn-atg-13	CBN-ATG-13 protein. (444 aa)
	CAEBREN_02705	Uncharacterized protein. (375 aa)
	Cbn-atg-3	Autophagy-related protein 3. (314 aa)
	Cbn-atg-9	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (921 aa)
	Cbn-atg-4.1	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (433 aa)
	Cbn-syx-17	CBN-SYX-17 protein. (250 aa)
	Cbn-atg-18	CBN-ATG-18 protein. (405 aa)
	Cbn-epg-5	CBN-EPG-5 protein. (1621 aa)
	CAEBREN_29755	Uncharacterized protein. (1199 aa)
	Cbn-atg-7	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (659 aa)
	CAEBREN_02803	Uncharacterized protein. (730 aa)
	CAEBREN_15768	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (457 aa)
	CAEBREN_13933	Uncharacterized protein. (429 aa)
	CAEBREN_31046	Uncharacterized protein. (282 aa)
	Cbn-atg-2	CBN-ATG-2 protein. (1825 aa)
	CAEBREN_12072	Protein kinase domain-containing protein. (220 aa)
	CAEBREN_10215	Phosphatidylinositol 3-kinase catalytic subunit type 3. (900 aa)
	CAEBREN_28350	Autophagy_act_C domain-containing protein. (158 aa)
	CAEBREN_26283	Uncharacterized protein. (688 aa)
	CAEBREN_05797	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (659 aa)
	CAEBREN_28302	Uncharacterized protein. (1268 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_02705	CAEBREN_02803	G0NA81	G0NYK5	Uncharacterized protein.	Uncharacterized protein.	0.491
CAEBREN_02705	CAEBREN_05797	G0NA81	G0PB43	Uncharacterized protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.849
CAEBREN_02705	CAEBREN_06907	G0NA81	G0N0X9	Uncharacterized protein.	Protein kinase domain-containing protein.	0.996
CAEBREN_02705	CAEBREN_09070	G0NA81	G0M8L3	Uncharacterized protein.	Uncharacterized protein.	0.997
CAEBREN_02705	CAEBREN_10215	G0NA81	G0P5H9	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.999
CAEBREN_02705	CAEBREN_11641	G0NA81	G0MKW6	Uncharacterized protein.	Uncharacterized protein.	0.682
CAEBREN_02705	CAEBREN_12072	G0NA81	G0P3A0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.981
CAEBREN_02705	CAEBREN_13933	G0NA81	G0P1S2	Uncharacterized protein.	Uncharacterized protein.	0.994
CAEBREN_02705	CAEBREN_15768	G0NA81	G0NZQ6	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.677
CAEBREN_02705	CAEBREN_16502	G0NA81	G0MIE5	Uncharacterized protein.	N_BRCA1_IG domain-containing protein.	0.560
CAEBREN_02705	CAEBREN_16840	G0NA81	G0MSH2	Uncharacterized protein.	Uncharacterized protein.	0.702
CAEBREN_02705	CAEBREN_19160	G0NA81	G0M8C7	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.981
CAEBREN_02705	CAEBREN_20867	G0NA81	G0MZX8	Uncharacterized protein.	Uncharacterized protein.	0.946
CAEBREN_02705	CAEBREN_22247	G0NA81	G0N4Y8	Uncharacterized protein.	ATG11 domain-containing protein.	0.995
CAEBREN_02705	CAEBREN_22760	G0NA81	G0MFD1	Uncharacterized protein.	Uncharacterized protein.	0.994
CAEBREN_02705	CAEBREN_24261	G0NA81	G0MFL0	Uncharacterized protein.	Uncharacterized protein.	0.994
CAEBREN_02705	CAEBREN_25303	G0NA81	G0N3L3	Uncharacterized protein.	Autophagy_act_C domain-containing protein.	0.567
CAEBREN_02705	CAEBREN_26283	G0NA81	G0PAG0	Uncharacterized protein.	Uncharacterized protein.	0.491
CAEBREN_02705	CAEBREN_28302	G0NA81	G0PJE8	Uncharacterized protein.	Uncharacterized protein.	0.997
CAEBREN_02705	CAEBREN_28350	G0NA81	G0P6A5	Uncharacterized protein.	Autophagy_act_C domain-containing protein.	0.567

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