(48 nodes) Mixed, incl. In StAR and phosphatidylcholine transfer protein, and Endoplasmic reticulum membrane organization network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_13469	RING-type domain-containing protein. (376 aa)
	Cbn-tag-340	CBN-TAG-340 protein. (448 aa)
	CAEBREN_05862	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. (454 aa)
	CAEBREN_07542	Uncharacterized protein. (88 aa)
	CAEBREN_19670	START domain-containing protein. (244 aa)
	CAEBREN_03838	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. (262 aa)
	CAEBREN_03011	Uncharacterized protein. (404 aa)
	CAEBREN_17066	START domain-containing protein. (268 aa)
	CAEBREN_16579	PH domain-containing protein. (285 aa)
	CAEBREN_14266	Oxysterol-binding protein; Belongs to the OSBP family. (444 aa)
	CAEBREN_12717	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. (567 aa)
	CAEBREN_07847	RING-type domain-containing protein. (188 aa)
	CAEBREN_15169	Uncharacterized protein. (516 aa)
	Cbn-vem-1	CBN-VEM-1 protein; Belongs to the cytochrome b5 family. (182 aa)
	CAEBREN_10356	Uncharacterized protein. (742 aa)
	Cbn-nhr-142	CBN-NHR-142 protein. (420 aa)
	CAEBREN_09124	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. (345 aa)
	CAEBREN_14616	START domain-containing protein. (238 aa)
	CAEBREN_12729	BTB domain-containing protein. (267 aa)
	CAEBREN_02913	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. (247 aa)
	CAEBREN_11492	Uncharacterized protein. (212 aa)
	CAEBREN_00008	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. (157 aa)
	CAEBREN_04654	START domain-containing protein. (357 aa)
	CAEBREN_32836	Uncharacterized protein. (383 aa)
	CAEBREN_09846	RING-type domain-containing protein. (334 aa)
	CAEBREN_07415	RING-type domain-containing protein. (313 aa)
	CAEBREN_23125	RING-type domain-containing protein. (158 aa)
	CAEBREN_08747	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (301 aa)
	CAEBREN_16699	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. (249 aa)
	CAEBREN_15959	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. (249 aa)
	CAEBREN_08627	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. (281 aa)
	CAEBREN_28817	Uncharacterized protein. (114 aa)
	CAEBREN_15280	Uncharacterized protein. (343 aa)
	CAEBREN_01671	Uncharacterized protein. (96 aa)
	CAEBREN_04202	Uncharacterized protein. (579 aa)
	CAEBREN_25997	START domain-containing protein. (234 aa)
	CAEBREN_14819	Uncharacterized protein. (369 aa)
	CAEBREN_31304	Uncharacterized protein. (743 aa)
	CAEBREN_32310	Oxysterol-binding protein; Belongs to the OSBP family. (448 aa)
	CAEBREN_21737	START domain-containing protein. (244 aa)
	CAEBREN_18135	Bap31 domain-containing protein. (153 aa)
	CAEBREN_30357	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (407 aa)
	CAEBREN_16996	Uncharacterized protein. (114 aa)
	CAEBREN_04824	RING-type domain-containing protein. (194 aa)
	CAEBREN_21557	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. (339 aa)
	CAEBREN_01641	RING-type domain-containing protein. (154 aa)
	CAEBREN_30117	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (365 aa)
	CAEBREN_28960	START domain-containing protein. (372 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00008	CAEBREN_11492	G0N861	G0N6G5	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	Uncharacterized protein.	0.647
CAEBREN_00008	CAEBREN_14266	G0N861	G0MLC9	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	Oxysterol-binding protein; Belongs to the OSBP family.	0.710
CAEBREN_00008	CAEBREN_14616	G0N861	G0N1Q6	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	START domain-containing protein.	0.651
CAEBREN_00008	CAEBREN_16579	G0N861	G0MLC8	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	PH domain-containing protein.	0.710
CAEBREN_00008	CAEBREN_18135	G0N861	G0P4L3	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	Bap31 domain-containing protein.	0.647
CAEBREN_00008	CAEBREN_19670	G0N861	G0MFL2	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	START domain-containing protein.	0.651
CAEBREN_00008	CAEBREN_21737	G0N861	G0P1S0	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	START domain-containing protein.	0.651
CAEBREN_00008	Cbn-tag-340	G0N861	G0MEK0	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	CBN-TAG-340 protein.	0.651
CAEBREN_00008	Cbn-vem-1	G0N861	G0MW69	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	CBN-VEM-1 protein; Belongs to the cytochrome b5 family.	0.549
CAEBREN_01641	CAEBREN_11492	G0PCZ2	G0N6G5	RING-type domain-containing protein.	Uncharacterized protein.	0.647
CAEBREN_01641	CAEBREN_14266	G0PCZ2	G0MLC9	RING-type domain-containing protein.	Oxysterol-binding protein; Belongs to the OSBP family.	0.710
CAEBREN_01641	CAEBREN_14616	G0PCZ2	G0N1Q6	RING-type domain-containing protein.	START domain-containing protein.	0.656
CAEBREN_01641	CAEBREN_16579	G0PCZ2	G0MLC8	RING-type domain-containing protein.	PH domain-containing protein.	0.710
CAEBREN_01641	CAEBREN_18135	G0PCZ2	G0P4L3	RING-type domain-containing protein.	Bap31 domain-containing protein.	0.647
CAEBREN_01641	CAEBREN_19670	G0PCZ2	G0MFL2	RING-type domain-containing protein.	START domain-containing protein.	0.656
CAEBREN_01641	CAEBREN_21737	G0PCZ2	G0P1S0	RING-type domain-containing protein.	START domain-containing protein.	0.656
CAEBREN_01641	Cbn-tag-340	G0PCZ2	G0MEK0	RING-type domain-containing protein.	CBN-TAG-340 protein.	0.656
CAEBREN_01641	Cbn-vem-1	G0PCZ2	G0MW69	RING-type domain-containing protein.	CBN-VEM-1 protein; Belongs to the cytochrome b5 family.	0.549
CAEBREN_01671	CAEBREN_05862	G0NWA6	G0MEZ2	Uncharacterized protein.	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	0.562
CAEBREN_01671	CAEBREN_08627	G0NWA6	G0NR29	Uncharacterized protein.	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	0.562

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