(17 nodes) Mixed, incl. Immunoglobulin domain, and Immunoglobulin V-set domain network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_13005	Uncharacterized protein. (537 aa)
	Cbn-syg-1	CBN-SYG-1 protein. (751 aa)
	Cbn-syg-2	CBN-SYG-2 protein. (1222 aa)
	Cbn-rig-5	CBN-RIG-5 protein. (199 aa)
	Cbn-zig-1	CBN-ZIG-1 protein. (456 aa)
	Cbn-him-4	CBN-HIM-4 protein. (2492 aa)
	Cbn-zoo-1	CBN-ZOO-1 protein. (1151 aa)
	CAEBREN_29154	Uncharacterized protein. (1620 aa)
	Cbn-zig-3	CBN-ZIG-3 protein. (229 aa)
	CAEBREN_18660	Uncharacterized protein. (486 aa)
	CAEBREN_32061	Uncharacterized protein. (268 aa)
	CAEBREN_31749	Uncharacterized protein. (841 aa)
	CAEBREN_32647	Uncharacterized protein. (203 aa)
	Cbn-rig-4	CBN-RIG-4 protein. (2322 aa)
	CAEBREN_22153	Uncharacterized protein. (1376 aa)
	Cbn-wrk-1	CBN-WRK-1 protein. (434 aa)
	CAEBREN_06276	Uncharacterized protein. (313 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_06276	CAEBREN_13005	G0P8P8	G0M6Y1	Uncharacterized protein.	Uncharacterized protein.	0.677
CAEBREN_06276	CAEBREN_18660	G0P8P8	G0N599	Uncharacterized protein.	Uncharacterized protein.	0.771
CAEBREN_06276	CAEBREN_22153	G0P8P8	G0NLS0	Uncharacterized protein.	Uncharacterized protein.	0.677
CAEBREN_06276	CAEBREN_29154	G0P8P8	G0MNJ2	Uncharacterized protein.	Uncharacterized protein.	0.442
CAEBREN_06276	CAEBREN_31749	G0P8P8	G0N7L5	Uncharacterized protein.	Uncharacterized protein.	0.785
CAEBREN_06276	CAEBREN_32061	G0P8P8	G0N663	Uncharacterized protein.	Uncharacterized protein.	0.995
CAEBREN_06276	CAEBREN_32647	G0P8P8	G0N7L6	Uncharacterized protein.	Uncharacterized protein.	0.738
CAEBREN_06276	Cbn-him-4	G0P8P8	G0MH26	Uncharacterized protein.	CBN-HIM-4 protein.	0.677
CAEBREN_06276	Cbn-rig-4	G0P8P8	G0NG37	Uncharacterized protein.	CBN-RIG-4 protein.	0.578
CAEBREN_06276	Cbn-syg-2	G0P8P8	G0MB96	Uncharacterized protein.	CBN-SYG-2 protein.	0.736
CAEBREN_06276	Cbn-zig-1	G0P8P8	G0MFM7	Uncharacterized protein.	CBN-ZIG-1 protein.	0.623
CAEBREN_13005	CAEBREN_06276	G0M6Y1	G0P8P8	Uncharacterized protein.	Uncharacterized protein.	0.677
CAEBREN_13005	CAEBREN_18660	G0M6Y1	G0N599	Uncharacterized protein.	Uncharacterized protein.	0.677
CAEBREN_13005	CAEBREN_31749	G0M6Y1	G0N7L5	Uncharacterized protein.	Uncharacterized protein.	0.513
CAEBREN_13005	CAEBREN_32061	G0M6Y1	G0N663	Uncharacterized protein.	Uncharacterized protein.	0.677
CAEBREN_13005	CAEBREN_32647	G0M6Y1	G0N7L6	Uncharacterized protein.	Uncharacterized protein.	0.513
CAEBREN_13005	Cbn-rig-4	G0M6Y1	G0NG37	Uncharacterized protein.	CBN-RIG-4 protein.	0.677
CAEBREN_13005	Cbn-rig-5	G0M6Y1	G0MF08	Uncharacterized protein.	CBN-RIG-5 protein.	0.677
CAEBREN_13005	Cbn-syg-1	G0M6Y1	G0M747	Uncharacterized protein.	CBN-SYG-1 protein.	0.677
CAEBREN_13005	Cbn-syg-2	G0M6Y1	G0MB96	Uncharacterized protein.	CBN-SYG-2 protein.	0.513

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