(10 nodes) Meiotic chromosome movement towards spindle pole, and Zinc finger, CCHC-type superfamily network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_01387	Uncharacterized protein. (140 aa)
	CAEBREN_25990	Uncharacterized protein. (720 aa)
	CAEBREN_24406	Uncharacterized protein. (715 aa)
	CAEBREN_00798	Uncharacterized protein. (754 aa)
	CAEBREN_12967	Uncharacterized protein. (728 aa)
	CAEBREN_12840	CCHC-type domain-containing protein. (1309 aa)
	CAEBREN_28772	Uncharacterized protein. (2012 aa)
	CAEBREN_28196	Uncharacterized protein. (47 aa)
	CAEBREN_32328	Uncharacterized protein. (123 aa)
	CAEBREN_07680	CCHC-type domain-containing protein. (809 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00798	CAEBREN_01387	G0MMW9	G0MJW9	Uncharacterized protein.	Uncharacterized protein.	0.576
CAEBREN_00798	CAEBREN_07680	G0MMW9	G0PAV5	Uncharacterized protein.	CCHC-type domain-containing protein.	0.545
CAEBREN_00798	CAEBREN_12840	G0MMW9	G0N8Q4	Uncharacterized protein.	CCHC-type domain-containing protein.	0.545
CAEBREN_00798	CAEBREN_28772	G0MMW9	G0NDG0	Uncharacterized protein.	Uncharacterized protein.	0.545
CAEBREN_01387	CAEBREN_00798	G0MJW9	G0MMW9	Uncharacterized protein.	Uncharacterized protein.	0.576
CAEBREN_01387	CAEBREN_07680	G0MJW9	G0PAV5	Uncharacterized protein.	CCHC-type domain-containing protein.	0.580
CAEBREN_01387	CAEBREN_12840	G0MJW9	G0N8Q4	Uncharacterized protein.	CCHC-type domain-containing protein.	0.580
CAEBREN_01387	CAEBREN_12967	G0MJW9	G0MMX0	Uncharacterized protein.	Uncharacterized protein.	0.576
CAEBREN_01387	CAEBREN_24406	G0MJW9	G0MMW8	Uncharacterized protein.	Uncharacterized protein.	0.576
CAEBREN_01387	CAEBREN_25990	G0MJW9	G0MMW7	Uncharacterized protein.	Uncharacterized protein.	0.576
CAEBREN_01387	CAEBREN_28196	G0MJW9	G0NX77	Uncharacterized protein.	Uncharacterized protein.	0.418
CAEBREN_01387	CAEBREN_28772	G0MJW9	G0NDG0	Uncharacterized protein.	Uncharacterized protein.	0.580
CAEBREN_01387	CAEBREN_32328	G0MJW9	G0NX78	Uncharacterized protein.	Uncharacterized protein.	0.418
CAEBREN_07680	CAEBREN_00798	G0PAV5	G0MMW9	CCHC-type domain-containing protein.	Uncharacterized protein.	0.545
CAEBREN_07680	CAEBREN_01387	G0PAV5	G0MJW9	CCHC-type domain-containing protein.	Uncharacterized protein.	0.580
CAEBREN_07680	CAEBREN_12967	G0PAV5	G0MMX0	CCHC-type domain-containing protein.	Uncharacterized protein.	0.545
CAEBREN_07680	CAEBREN_24406	G0PAV5	G0MMW8	CCHC-type domain-containing protein.	Uncharacterized protein.	0.545
CAEBREN_07680	CAEBREN_25990	G0PAV5	G0MMW7	CCHC-type domain-containing protein.	Uncharacterized protein.	0.545
CAEBREN_12840	CAEBREN_00798	G0N8Q4	G0MMW9	CCHC-type domain-containing protein.	Uncharacterized protein.	0.545
CAEBREN_12840	CAEBREN_01387	G0N8Q4	G0MJW9	CCHC-type domain-containing protein.	Uncharacterized protein.	0.580

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