(16 nodes) Mixed, incl. Rab3GAP regulatory subunit, and Regulation of regulated secretory pathway network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_23566	Uncharacterized protein. (1270 aa)
	CAEBREN_01913	Uncharacterized protein. (310 aa)
	Cbn-rbg-1	CBN-RBG-1 protein. (911 aa)
	CAEBREN_32082	Uncharacterized protein. (930 aa)
	CAEBREN_30951	Uncharacterized protein. (26 aa)
	CAEBREN_31969	Uncharacterized protein. (96 aa)
	CAEBREN_28082	Uncharacterized protein. (92 aa)
	CAEBREN_06178	Uncharacterized protein. (1307 aa)
	CAEBREN_03430	Uncharacterized protein. (202 aa)
	CAEBREN_00367	UDENN domain-containing protein. (1447 aa)
	CAEBREN_04237	Uncharacterized protein. (215 aa)
	CAEBREN_00334	Uncharacterized protein. (285 aa)
	CAEBREN_23638	Uncharacterized protein. (795 aa)
	CAEBREN_21017	Rav1p_C domain-containing protein. (116 aa)
	CAEBREN_05070	Uncharacterized protein. (1304 aa)
	CAEBREN_00585	Uncharacterized protein. (285 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00334	CAEBREN_03430	G0NWX1	G0MZ08	Uncharacterized protein.	Uncharacterized protein.	0.830
CAEBREN_00334	CAEBREN_05070	G0NWX1	G0PBP8	Uncharacterized protein.	Uncharacterized protein.	0.983
CAEBREN_00334	CAEBREN_06178	G0NWX1	G0MFI1	Uncharacterized protein.	Uncharacterized protein.	0.983
CAEBREN_00367	CAEBREN_04237	G0N7K3	G0NFU7	UDENN domain-containing protein.	Uncharacterized protein.	0.908
CAEBREN_00367	CAEBREN_05070	G0N7K3	G0PBP8	UDENN domain-containing protein.	Uncharacterized protein.	0.487
CAEBREN_00367	CAEBREN_06178	G0N7K3	G0MFI1	UDENN domain-containing protein.	Uncharacterized protein.	0.487
CAEBREN_00367	CAEBREN_32082	G0N7K3	G0MEY0	UDENN domain-containing protein.	Uncharacterized protein.	0.564
CAEBREN_00367	Cbn-rbg-1	G0N7K3	G0MB26	UDENN domain-containing protein.	CBN-RBG-1 protein.	0.557
CAEBREN_00585	CAEBREN_03430	G0PE99	G0MZ08	Uncharacterized protein.	Uncharacterized protein.	0.830
CAEBREN_00585	CAEBREN_05070	G0PE99	G0PBP8	Uncharacterized protein.	Uncharacterized protein.	0.983
CAEBREN_00585	CAEBREN_06178	G0PE99	G0MFI1	Uncharacterized protein.	Uncharacterized protein.	0.983
CAEBREN_03430	CAEBREN_00334	G0MZ08	G0NWX1	Uncharacterized protein.	Uncharacterized protein.	0.830
CAEBREN_03430	CAEBREN_00585	G0MZ08	G0PE99	Uncharacterized protein.	Uncharacterized protein.	0.830
CAEBREN_03430	CAEBREN_04237	G0MZ08	G0NFU7	Uncharacterized protein.	Uncharacterized protein.	0.575
CAEBREN_03430	CAEBREN_05070	G0MZ08	G0PBP8	Uncharacterized protein.	Uncharacterized protein.	0.856
CAEBREN_03430	CAEBREN_06178	G0MZ08	G0MFI1	Uncharacterized protein.	Uncharacterized protein.	0.856
CAEBREN_03430	Cbn-rbg-1	G0MZ08	G0MB26	Uncharacterized protein.	CBN-RBG-1 protein.	0.907
CAEBREN_04237	CAEBREN_00367	G0NFU7	G0N7K3	Uncharacterized protein.	UDENN domain-containing protein.	0.908
CAEBREN_04237	CAEBREN_03430	G0NFU7	G0MZ08	Uncharacterized protein.	Uncharacterized protein.	0.575
CAEBREN_04237	CAEBREN_23566	G0NFU7	G0M728	Uncharacterized protein.	Uncharacterized protein.	0.695

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