(30 nodes) Mostly uncharacterized, incl. Meiotic chromosome movement towards spindle pole, and LRP chaperone MESD network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_21124	Uncharacterized protein. (683 aa)
	CAEBREN_13281	Uncharacterized protein. (749 aa)
	CAEBREN_03824	Uncharacterized protein. (405 aa)
	CAEBREN_30144	Uncharacterized protein. (553 aa)
	CAEBREN_06099	G_PROTEIN_RECEP_F1_2 domain-containing protein. (430 aa)
	CAEBREN_13129	Col_cuticle_N domain-containing protein. (302 aa)
	CAEBREN_16943	Col_cuticle_N domain-containing protein. (302 aa)
	CAEBREN_07457	Col_cuticle_N domain-containing protein. (302 aa)
	Cbn-col-167	CBN-COL-167 protein. (302 aa)
	CAEBREN_22738	Uncharacterized protein. (530 aa)
	CAEBREN_05663	Uncharacterized protein. (344 aa)
	CAEBREN_08720	Uncharacterized protein. (344 aa)
	CAEBREN_31229	Uncharacterized protein. (154 aa)
	CAEBREN_08410	Uncharacterized protein. (1149 aa)
	CAEBREN_04243	MFS domain-containing protein. (476 aa)
	CAEBREN_20865	Uncharacterized protein. (554 aa)
	CAEBREN_13535	Uncharacterized protein. (284 aa)
	CAEBREN_32739	Recep_L_domain domain-containing protein. (1119 aa)
	CAEBREN_29207	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (392 aa)
	Cbn-srg-69	Serpentine receptor class gamma; Belongs to the nematode receptor-like protein srg family. (342 aa)
	Cbn-bmy-1	CBN-BMY-1 protein. (187 aa)
	CAEBREN_23380	Uncharacterized protein. (590 aa)
	CAEBREN_11825	Uncharacterized protein. (894 aa)
	CAEBREN_11174	Uncharacterized protein. (334 aa)
	CAEBREN_10366	Uncharacterized protein. (335 aa)
	CAEBREN_09636	Uncharacterized protein. (149 aa)
	CAEBREN_29226	Uncharacterized protein. (187 aa)
	CAEBREN_32536	Serpentine receptor class gamma; Belongs to the nematode receptor-like protein srg family. (104 aa)
	CAEBREN_28359	Recep_L_domain domain-containing protein. (994 aa)
	CAEBREN_29200	Uncharacterized protein. (409 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_03824	CAEBREN_04243	G0MD79	G0N408	Uncharacterized protein.	MFS domain-containing protein.	0.561
CAEBREN_03824	CAEBREN_05663	G0MD79	G0MT61	Uncharacterized protein.	Uncharacterized protein.	0.576
CAEBREN_03824	CAEBREN_06099	G0MD79	G0MSK1	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.569
CAEBREN_03824	CAEBREN_07457	G0MD79	G0MST8	Uncharacterized protein.	Col_cuticle_N domain-containing protein.	0.410
CAEBREN_03824	CAEBREN_08720	G0MD79	G0MT62	Uncharacterized protein.	Uncharacterized protein.	0.576
CAEBREN_03824	CAEBREN_09636	G0MD79	G0PD54	Uncharacterized protein.	Uncharacterized protein.	0.564
CAEBREN_03824	CAEBREN_11825	G0MD79	G0NP18	Uncharacterized protein.	Uncharacterized protein.	0.564
CAEBREN_03824	CAEBREN_13129	G0MD79	G0MST5	Uncharacterized protein.	Col_cuticle_N domain-containing protein.	0.410
CAEBREN_03824	CAEBREN_13535	G0MD79	G0N9I2	Uncharacterized protein.	Uncharacterized protein.	0.564
CAEBREN_03824	CAEBREN_16943	G0MD79	G0MST6	Uncharacterized protein.	Col_cuticle_N domain-containing protein.	0.410
CAEBREN_03824	CAEBREN_20865	G0MD79	G0N578	Uncharacterized protein.	Uncharacterized protein.	0.579
CAEBREN_03824	CAEBREN_28359	G0MD79	G0PF39	Uncharacterized protein.	Recep_L_domain domain-containing protein.	0.711
CAEBREN_03824	CAEBREN_29226	G0MD79	G0PDG7	Uncharacterized protein.	Uncharacterized protein.	0.561
CAEBREN_03824	CAEBREN_31229	G0MD79	G0MZ66	Uncharacterized protein.	Uncharacterized protein.	0.579
CAEBREN_03824	CAEBREN_32536	G0MD79	G0PDG9	Uncharacterized protein.	Serpentine receptor class gamma; Belongs to the nematode receptor-like protein srg family.	0.432
CAEBREN_03824	CAEBREN_32739	G0MD79	G0N9L0	Uncharacterized protein.	Recep_L_domain domain-containing protein.	0.711
CAEBREN_03824	Cbn-bmy-1	G0MD79	G0NAY4	Uncharacterized protein.	CBN-BMY-1 protein.	0.561
CAEBREN_03824	Cbn-col-167	G0MD79	G0MST9	Uncharacterized protein.	CBN-COL-167 protein.	0.410
CAEBREN_03824	Cbn-srg-69	G0MD79	G0NAY2	Uncharacterized protein.	Serpentine receptor class gamma; Belongs to the nematode receptor-like protein srg family.	0.432
CAEBREN_04243	CAEBREN_03824	G0N408	G0MD79	MFS domain-containing protein.	Uncharacterized protein.	0.561

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