(12 nodes) Mixed, incl. ADAMTS/ADAMTS-like, Spacer 1, and Collagen network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-ddr-1	CBN-DDR-1 protein. (764 aa)
	CAEBREN_22729	Uncharacterized protein. (231 aa)
	CAEBREN_29944	Collagen IV NC1 domain-containing protein. (1110 aa)
	Cbn-emb-9	CBN-EMB-9 protein. (1759 aa)
	Cbn-ppn-1	CBN-PPN-1 protein. (1834 aa)
	Cbn-ost-1	CBN-OST-1 protein. (264 aa)
	Cbn-fbl-1	Fibulin-1; Belongs to the fibulin family. (642 aa)
	Cbn-gon-1	CBN-GON-1 protein. (2162 aa)
	Cbn-mig-17	CBN-MIG-17 protein. (510 aa)
	CAEBREN_28289	Uncharacterized protein. (2157 aa)
	CAEBREN_30774	Fibulin-1; Belongs to the fibulin family. (729 aa)
	CAEBREN_28463	Uncharacterized protein. (130 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_22729	CAEBREN_28463	G0MCG8	G0PFI7	Uncharacterized protein.	Uncharacterized protein.	0.579
CAEBREN_22729	CAEBREN_29944	G0MCG8	G0MHJ7	Uncharacterized protein.	Collagen IV NC1 domain-containing protein.	0.576
CAEBREN_22729	CAEBREN_30774	G0MCG8	G0PFI6	Uncharacterized protein.	Fibulin-1; Belongs to the fibulin family.	0.579
CAEBREN_22729	Cbn-emb-9	G0MCG8	G0MK00	Uncharacterized protein.	CBN-EMB-9 protein.	0.465
CAEBREN_22729	Cbn-fbl-1	G0MCG8	G0NRB0	Uncharacterized protein.	Fibulin-1; Belongs to the fibulin family.	0.579
CAEBREN_22729	Cbn-mig-17	G0MCG8	G0P6P8	Uncharacterized protein.	CBN-MIG-17 protein.	0.784
CAEBREN_22729	Cbn-ppn-1	G0MCG8	G0MTN4	Uncharacterized protein.	CBN-PPN-1 protein.	0.563
CAEBREN_28289	CAEBREN_28463	G0PBY5	G0PFI7	Uncharacterized protein.	Uncharacterized protein.	0.639
CAEBREN_28289	CAEBREN_30774	G0PBY5	G0PFI6	Uncharacterized protein.	Fibulin-1; Belongs to the fibulin family.	0.639
CAEBREN_28289	Cbn-emb-9	G0PBY5	G0MK00	Uncharacterized protein.	CBN-EMB-9 protein.	0.658
CAEBREN_28289	Cbn-fbl-1	G0PBY5	G0NRB0	Uncharacterized protein.	Fibulin-1; Belongs to the fibulin family.	0.639
CAEBREN_28289	Cbn-ppn-1	G0PBY5	G0MTN4	Uncharacterized protein.	CBN-PPN-1 protein.	0.529
CAEBREN_28463	CAEBREN_22729	G0PFI7	G0MCG8	Uncharacterized protein.	Uncharacterized protein.	0.579
CAEBREN_28463	CAEBREN_28289	G0PFI7	G0PBY5	Uncharacterized protein.	Uncharacterized protein.	0.639
CAEBREN_28463	CAEBREN_29944	G0PFI7	G0MHJ7	Uncharacterized protein.	Collagen IV NC1 domain-containing protein.	0.641
CAEBREN_28463	Cbn-emb-9	G0PFI7	G0MK00	Uncharacterized protein.	CBN-EMB-9 protein.	0.653
CAEBREN_28463	Cbn-gon-1	G0PFI7	G0NUM1	Uncharacterized protein.	CBN-GON-1 protein.	0.639
CAEBREN_28463	Cbn-mig-17	G0PFI7	G0P6P8	Uncharacterized protein.	CBN-MIG-17 protein.	0.633
CAEBREN_28463	Cbn-ost-1	G0PFI7	G0N6P1	Uncharacterized protein.	CBN-OST-1 protein.	0.410
CAEBREN_28463	Cbn-ppn-1	G0PFI7	G0MTN4	Uncharacterized protein.	CBN-PPN-1 protein.	0.616

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