(12 nodes) Mixed, incl. Kinetochore assembly, and Basal cortex network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_23261	Uncharacterized protein. (1016 aa)
	CAEBREN_17619	Uncharacterized protein. (172 aa)
	CAEBREN_24929	Uncharacterized protein. (146 aa)
	Cbn-cls-2	CBN-CLS-2 protein. (1021 aa)
	CAEBREN_09435	Uncharacterized protein. (330 aa)
	CAEBREN_11223	Uncharacterized protein. (1036 aa)
	CAEBREN_00633	Uncharacterized protein. (136 aa)
	CAEBREN_19729	Uncharacterized protein. (136 aa)
	CAEBREN_14654	Uncharacterized protein. (372 aa)
	CAEBREN_14013	Uncharacterized protein. (259 aa)
	Cbn-hcp-4	CBN-HCP-4 protein. (894 aa)
	CAEBREN_30532	Uncharacterized protein. (895 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00633	CAEBREN_14013	G0NH86	G0P0C0	Uncharacterized protein.	Uncharacterized protein.	0.553
CAEBREN_00633	CAEBREN_17619	G0NH86	G0MEK2	Uncharacterized protein.	Uncharacterized protein.	0.406
CAEBREN_00633	CAEBREN_24929	G0NH86	G0MEV2	Uncharacterized protein.	Uncharacterized protein.	0.464
CAEBREN_00633	Cbn-cls-2	G0NH86	G0MKJ0	Uncharacterized protein.	CBN-CLS-2 protein.	0.553
CAEBREN_09435	CAEBREN_11223	G0MTB1	G0MZX9	Uncharacterized protein.	Uncharacterized protein.	0.879
CAEBREN_09435	CAEBREN_14013	G0MTB1	G0P0C0	Uncharacterized protein.	Uncharacterized protein.	0.563
CAEBREN_09435	CAEBREN_14654	G0MTB1	G0NZ85	Uncharacterized protein.	Uncharacterized protein.	0.521
CAEBREN_09435	CAEBREN_17619	G0MTB1	G0MEK2	Uncharacterized protein.	Uncharacterized protein.	0.700
CAEBREN_09435	CAEBREN_23261	G0MTB1	G0MBT8	Uncharacterized protein.	Uncharacterized protein.	0.879
CAEBREN_09435	CAEBREN_24929	G0MTB1	G0MEV2	Uncharacterized protein.	Uncharacterized protein.	0.973
CAEBREN_09435	Cbn-cls-2	G0MTB1	G0MKJ0	Uncharacterized protein.	CBN-CLS-2 protein.	0.563
CAEBREN_11223	CAEBREN_09435	G0MZX9	G0MTB1	Uncharacterized protein.	Uncharacterized protein.	0.879
CAEBREN_11223	CAEBREN_14013	G0MZX9	G0P0C0	Uncharacterized protein.	Uncharacterized protein.	0.540
CAEBREN_11223	CAEBREN_14654	G0MZX9	G0NZ85	Uncharacterized protein.	Uncharacterized protein.	0.650
CAEBREN_11223	CAEBREN_17619	G0MZX9	G0MEK2	Uncharacterized protein.	Uncharacterized protein.	0.497
CAEBREN_11223	CAEBREN_24929	G0MZX9	G0MEV2	Uncharacterized protein.	Uncharacterized protein.	0.869
CAEBREN_11223	CAEBREN_30532	G0MZX9	G0PHP9	Uncharacterized protein.	Uncharacterized protein.	0.501
CAEBREN_11223	Cbn-cls-2	G0MZX9	G0MKJ0	Uncharacterized protein.	CBN-CLS-2 protein.	0.540
CAEBREN_11223	Cbn-hcp-4	G0MZX9	G0PE19	Uncharacterized protein.	CBN-HCP-4 protein.	0.501
CAEBREN_14013	CAEBREN_00633	G0P0C0	G0NH86	Uncharacterized protein.	Uncharacterized protein.	0.553

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