(6 nodes) Mixed, incl. LAR-interacting protein, Liprin, and Transmembrane receptor protein phosphatase activity network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_23645	Uncharacterized protein. (168 aa)
	Cbn-syd-2	CBN-SYD-2 protein. (1131 aa)
	Cbn-hlb-1	CBN-HLB-1 protein. (959 aa)
	CAEBREN_19531	Uncharacterized protein. (197 aa)
	CAEBREN_28868	WSN domain-containing protein. (825 aa)
	CAEBREN_30513	Uncharacterized protein. (1457 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_19531	CAEBREN_23645	G0N1S7	G0MFI9	Uncharacterized protein.	Uncharacterized protein.	0.435
CAEBREN_19531	CAEBREN_28868	G0N1S7	G0N2I3	Uncharacterized protein.	WSN domain-containing protein.	0.617
CAEBREN_19531	CAEBREN_30513	G0N1S7	G0NAN6	Uncharacterized protein.	Uncharacterized protein.	0.617
CAEBREN_19531	Cbn-syd-2	G0N1S7	G0MI89	Uncharacterized protein.	CBN-SYD-2 protein.	0.980
CAEBREN_23645	CAEBREN_19531	G0MFI9	G0N1S7	Uncharacterized protein.	Uncharacterized protein.	0.435
CAEBREN_23645	CAEBREN_28868	G0MFI9	G0N2I3	Uncharacterized protein.	WSN domain-containing protein.	0.691
CAEBREN_23645	CAEBREN_30513	G0MFI9	G0NAN6	Uncharacterized protein.	Uncharacterized protein.	0.688
CAEBREN_23645	Cbn-hlb-1	G0MFI9	G0N1S6	Uncharacterized protein.	CBN-HLB-1 protein.	0.435
CAEBREN_23645	Cbn-syd-2	G0MFI9	G0MI89	Uncharacterized protein.	CBN-SYD-2 protein.	0.605
CAEBREN_28868	CAEBREN_19531	G0N2I3	G0N1S7	WSN domain-containing protein.	Uncharacterized protein.	0.617
CAEBREN_28868	CAEBREN_23645	G0N2I3	G0MFI9	WSN domain-containing protein.	Uncharacterized protein.	0.691
CAEBREN_28868	Cbn-hlb-1	G0N2I3	G0N1S6	WSN domain-containing protein.	CBN-HLB-1 protein.	0.698
CAEBREN_28868	Cbn-syd-2	G0N2I3	G0MI89	WSN domain-containing protein.	CBN-SYD-2 protein.	0.896
CAEBREN_30513	CAEBREN_19531	G0NAN6	G0N1S7	Uncharacterized protein.	Uncharacterized protein.	0.617
CAEBREN_30513	CAEBREN_23645	G0NAN6	G0MFI9	Uncharacterized protein.	Uncharacterized protein.	0.688
CAEBREN_30513	Cbn-hlb-1	G0NAN6	G0N1S6	Uncharacterized protein.	CBN-HLB-1 protein.	0.751
CAEBREN_30513	Cbn-syd-2	G0NAN6	G0MI89	Uncharacterized protein.	CBN-SYD-2 protein.	0.886
Cbn-hlb-1	CAEBREN_23645	G0N1S6	G0MFI9	CBN-HLB-1 protein.	Uncharacterized protein.	0.435
Cbn-hlb-1	CAEBREN_28868	G0N1S6	G0N2I3	CBN-HLB-1 protein.	WSN domain-containing protein.	0.698
Cbn-hlb-1	CAEBREN_30513	G0N1S6	G0NAN6	CBN-HLB-1 protein.	Uncharacterized protein.	0.751

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