(6 nodes) Histone exchange, and Transmembrane protein 177 network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_17792	Uncharacterized protein. (332 aa)
	CAEBREN_07323	YL1_C domain-containing protein. (136 aa)
	CAEBREN_17940	Uncharacterized protein. (2007 aa)
	CAEBREN_12376	Uncharacterized protein. (2008 aa)
	CAEBREN_32273	BCNT-C domain-containing protein. (239 aa)
	CAEBREN_04650	Uncharacterized protein; Belongs to the actin family. (427 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_04650	CAEBREN_07323	G0NW66	G0MEZ6	Uncharacterized protein; Belongs to the actin family.	YL1_C domain-containing protein.	0.953
CAEBREN_04650	CAEBREN_12376	G0NW66	G0NSA3	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.922
CAEBREN_04650	CAEBREN_17792	G0NW66	G0MEN2	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.966
CAEBREN_04650	CAEBREN_17940	G0NW66	G0N639	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.922
CAEBREN_04650	CAEBREN_32273	G0NW66	G0NUZ3	Uncharacterized protein; Belongs to the actin family.	BCNT-C domain-containing protein.	0.803
CAEBREN_07323	CAEBREN_04650	G0MEZ6	G0NW66	YL1_C domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.953
CAEBREN_07323	CAEBREN_12376	G0MEZ6	G0NSA3	YL1_C domain-containing protein.	Uncharacterized protein.	0.914
CAEBREN_07323	CAEBREN_17792	G0MEZ6	G0MEN2	YL1_C domain-containing protein.	Uncharacterized protein.	0.942
CAEBREN_07323	CAEBREN_17940	G0MEZ6	G0N639	YL1_C domain-containing protein.	Uncharacterized protein.	0.914
CAEBREN_07323	CAEBREN_32273	G0MEZ6	G0NUZ3	YL1_C domain-containing protein.	BCNT-C domain-containing protein.	0.870
CAEBREN_12376	CAEBREN_04650	G0NSA3	G0NW66	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.922
CAEBREN_12376	CAEBREN_07323	G0NSA3	G0MEZ6	Uncharacterized protein.	YL1_C domain-containing protein.	0.914
CAEBREN_12376	CAEBREN_17792	G0NSA3	G0MEN2	Uncharacterized protein.	Uncharacterized protein.	0.898
CAEBREN_12376	CAEBREN_32273	G0NSA3	G0NUZ3	Uncharacterized protein.	BCNT-C domain-containing protein.	0.917
CAEBREN_17792	CAEBREN_04650	G0MEN2	G0NW66	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.966
CAEBREN_17792	CAEBREN_07323	G0MEN2	G0MEZ6	Uncharacterized protein.	YL1_C domain-containing protein.	0.942
CAEBREN_17792	CAEBREN_12376	G0MEN2	G0NSA3	Uncharacterized protein.	Uncharacterized protein.	0.898
CAEBREN_17792	CAEBREN_17940	G0MEN2	G0N639	Uncharacterized protein.	Uncharacterized protein.	0.898
CAEBREN_17792	CAEBREN_32273	G0MEN2	G0NUZ3	Uncharacterized protein.	BCNT-C domain-containing protein.	0.855
CAEBREN_17940	CAEBREN_04650	G0N639	G0NW66	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.922

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About