(5 nodes) Mixed, incl. Nuclear proteasome complex, and 26S proteasome non-ATPase regulatory subunit 4 network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_07828	Uncharacterized protein. (118 aa)
	CAEBREN_12205	AAA domain-containing protein; Belongs to the AAA ATPase family. (443 aa)
	CAEBREN_17091	VWFA domain-containing protein. (348 aa)
	CAEBREN_12167	MPN domain-containing protein. (363 aa)
	CAEBREN_15361	PCI domain-containing protein. (491 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_07828	CAEBREN_12167	G0MV43	G0NJR2	Uncharacterized protein.	MPN domain-containing protein.	0.998
CAEBREN_07828	CAEBREN_12205	G0MV43	G0MXN0	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
CAEBREN_07828	CAEBREN_15361	G0MV43	G0P856	Uncharacterized protein.	PCI domain-containing protein.	0.999
CAEBREN_07828	CAEBREN_17091	G0MV43	G0NH80	Uncharacterized protein.	VWFA domain-containing protein.	0.998
CAEBREN_12167	CAEBREN_07828	G0NJR2	G0MV43	MPN domain-containing protein.	Uncharacterized protein.	0.998
CAEBREN_12167	CAEBREN_12205	G0NJR2	G0MXN0	MPN domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.998
CAEBREN_12167	CAEBREN_15361	G0NJR2	G0P856	MPN domain-containing protein.	PCI domain-containing protein.	0.998
CAEBREN_12167	CAEBREN_17091	G0NJR2	G0NH80	MPN domain-containing protein.	VWFA domain-containing protein.	0.997
CAEBREN_12205	CAEBREN_07828	G0MXN0	G0MV43	AAA domain-containing protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.999
CAEBREN_12205	CAEBREN_12167	G0MXN0	G0NJR2	AAA domain-containing protein; Belongs to the AAA ATPase family.	MPN domain-containing protein.	0.998
CAEBREN_12205	CAEBREN_15361	G0MXN0	G0P856	AAA domain-containing protein; Belongs to the AAA ATPase family.	PCI domain-containing protein.	0.999
CAEBREN_12205	CAEBREN_17091	G0MXN0	G0NH80	AAA domain-containing protein; Belongs to the AAA ATPase family.	VWFA domain-containing protein.	0.999
CAEBREN_15361	CAEBREN_07828	G0P856	G0MV43	PCI domain-containing protein.	Uncharacterized protein.	0.999
CAEBREN_15361	CAEBREN_12167	G0P856	G0NJR2	PCI domain-containing protein.	MPN domain-containing protein.	0.998
CAEBREN_15361	CAEBREN_12205	G0P856	G0MXN0	PCI domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
CAEBREN_15361	CAEBREN_17091	G0P856	G0NH80	PCI domain-containing protein.	VWFA domain-containing protein.	0.998
CAEBREN_17091	CAEBREN_07828	G0NH80	G0MV43	VWFA domain-containing protein.	Uncharacterized protein.	0.998
CAEBREN_17091	CAEBREN_12167	G0NH80	G0NJR2	VWFA domain-containing protein.	MPN domain-containing protein.	0.997
CAEBREN_17091	CAEBREN_12205	G0NH80	G0MXN0	VWFA domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
CAEBREN_17091	CAEBREN_15361	G0NH80	G0P856	VWFA domain-containing protein.	PCI domain-containing protein.	0.998

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