(49 nodes) Motor neuron axon guidance network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-ten-1	CBN-TEN-1 protein. (1490 aa)
	CAEBREN_23738	Uncharacterized protein. (545 aa)
	CAEBREN_00313	Uncharacterized protein. (811 aa)
	CAEBREN_31403	Uncharacterized protein. (191 aa)
	CAEBREN_28233	Uncharacterized protein. (900 aa)
	CAEBREN_31128	Sema domain-containing protein. (1421 aa)
	CAEBREN_26136	WH1 domain-containing protein. (496 aa)
	CAEBREN_23292	Uncharacterized protein. (191 aa)
	CAEBREN_00469	Amidohydro-rel domain-containing protein. (889 aa)
	CAEBREN_15706	Uncharacterized protein. (556 aa)
	Cbn-max-2	CBN-MAX-2 protein. (257 aa)
	Cbn-unc-40	CBN-UNC-40 protein. (1420 aa)
	Cbn-plx-2	CBN-PLX-2 protein. (1516 aa)
	CAEBREN_16439	Amidohydro-rel domain-containing protein. (890 aa)
	CAEBREN_28461	Uncharacterized protein. (67 aa)
	CAEBREN_09790	Uncharacterized protein. (296 aa)
	CAEBREN_15130	Uncharacterized protein. (502 aa)
	Cbn-wve-1	CBN-WVE-1 protein. (470 aa)
	CAEBREN_24332	Uncharacterized protein. (402 aa)
	Cbn-rack-1	CBN-RACK-1 protein. (325 aa)
	CAEBREN_00670	Uncharacterized protein. (1682 aa)
	CAEBREN_02058	Uncharacterized protein. (1660 aa)
	CAEBREN_07467	WH1 domain-containing protein. (459 aa)
	CAEBREN_20778	Uncharacterized protein. (811 aa)
	CAEBREN_32835	Uncharacterized protein. (730 aa)
	Cbn-spon-1	CBN-SPON-1 protein. (818 aa)
	CAEBREN_26324	Uncharacterized protein. (187 aa)
	CAEBREN_23563	Uncharacterized protein. (474 aa)
	CAEBREN_22163	Uncharacterized protein. (1651 aa)
	CAEBREN_09948	Uncharacterized protein. (612 aa)
	CAEBREN_08074	Uncharacterized protein. (938 aa)
	CAEBREN_11911	Uncharacterized protein. (466 aa)
	Cbn-ptp-3	CBN-PTP-3 protein. (2285 aa)
	Cbn-unc-53	CBN-UNC-53 protein. (1692 aa)
	Cbn-pak-1	Non-specific serine/threonine protein kinase. (570 aa)
	CAEBREN_15920	Uncharacterized protein. (3264 aa)
	CAEBREN_19421	Uncharacterized protein. (885 aa)
	CAEBREN_21692	Uncharacterized protein. (1443 aa)
	CAEBREN_05803	Uncharacterized protein. (518 aa)
	CAEBREN_14393	Uncharacterized protein. (1427 aa)
	CAEBREN_12943	Uncharacterized protein. (195 aa)
	CAEBREN_30078	Uncharacterized protein. (948 aa)
	CAEBREN_21650	Uncharacterized protein. (1392 aa)
	Cbn-eak-6	CBN-EAK-6 protein. (226 aa)
	CAEBREN_23645	Uncharacterized protein. (168 aa)
	CAEBREN_21863	Uncharacterized protein. (2732 aa)
	Cbn-ddr-1	CBN-DDR-1 protein. (764 aa)
	Cbn-ddr-2	CBN-DDR-2 protein. (790 aa)
	CAEBREN_29392	Uncharacterized protein. (195 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00313	CAEBREN_00469	G0PLB9	G0PF59	Uncharacterized protein.	Amidohydro-rel domain-containing protein.	0.512
CAEBREN_00313	CAEBREN_02058	G0PLB9	G0NJQ0	Uncharacterized protein.	Uncharacterized protein.	0.632
CAEBREN_00313	CAEBREN_07467	G0PLB9	G0NBK0	Uncharacterized protein.	WH1 domain-containing protein.	0.569
CAEBREN_00313	CAEBREN_09948	G0PLB9	G0N586	Uncharacterized protein.	Uncharacterized protein.	0.967
CAEBREN_00313	CAEBREN_16439	G0PLB9	G0P335	Uncharacterized protein.	Amidohydro-rel domain-containing protein.	0.512
CAEBREN_00313	CAEBREN_21692	G0PLB9	G0MNK6	Uncharacterized protein.	Uncharacterized protein.	0.922
CAEBREN_00313	CAEBREN_23292	G0PLB9	G0PF62	Uncharacterized protein.	Uncharacterized protein.	0.575
CAEBREN_00313	CAEBREN_23738	G0PLB9	G0PLF0	Uncharacterized protein.	Uncharacterized protein.	0.632
CAEBREN_00313	CAEBREN_26136	G0PLB9	G0PFQ0	Uncharacterized protein.	WH1 domain-containing protein.	0.569
CAEBREN_00313	CAEBREN_29392	G0PLB9	G0M6T4	Uncharacterized protein.	Uncharacterized protein.	0.566
CAEBREN_00313	Cbn-ptp-3	G0PLB9	G0MVH3	Uncharacterized protein.	CBN-PTP-3 protein.	0.415
CAEBREN_00313	Cbn-unc-40	G0PLB9	G0P6F4	Uncharacterized protein.	CBN-UNC-40 protein.	0.922
CAEBREN_00313	Cbn-unc-53	G0PLB9	G0MVF8	Uncharacterized protein.	CBN-UNC-53 protein.	0.563
CAEBREN_00469	CAEBREN_00313	G0PF59	G0PLB9	Amidohydro-rel domain-containing protein.	Uncharacterized protein.	0.512
CAEBREN_00469	CAEBREN_02058	G0PF59	G0NJQ0	Amidohydro-rel domain-containing protein.	Uncharacterized protein.	0.611
CAEBREN_00469	CAEBREN_07467	G0PF59	G0NBK0	Amidohydro-rel domain-containing protein.	WH1 domain-containing protein.	0.570
CAEBREN_00469	CAEBREN_09948	G0PF59	G0N586	Amidohydro-rel domain-containing protein.	Uncharacterized protein.	0.568
CAEBREN_00469	CAEBREN_20778	G0PF59	G0NA99	Amidohydro-rel domain-containing protein.	Uncharacterized protein.	0.512
CAEBREN_00469	CAEBREN_23738	G0PF59	G0PLF0	Amidohydro-rel domain-containing protein.	Uncharacterized protein.	0.611
CAEBREN_00469	CAEBREN_26136	G0PF59	G0PFQ0	Amidohydro-rel domain-containing protein.	WH1 domain-containing protein.	0.570

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