(23 nodes) Chondroitin sulfate biosynthetic process network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_10412	Uncharacterized protein. (264 aa)
	CAEBREN_32725	Uncharacterized protein. (310 aa)
	CAEBREN_28835	Uncharacterized protein. (304 aa)
	CAEBREN_14351	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family. (359 aa)
	CAEBREN_11721	Uncharacterized protein. (207 aa)
	CAEBREN_08795	Hexosyltransferase. (726 aa)
	CAEBREN_18706	Uncharacterized protein. (330 aa)
	CAEBREN_28341	Uncharacterized protein. (237 aa)
	CAEBREN_20023	Uncharacterized protein. (304 aa)
	CAEBREN_14282	Uncharacterized protein. (259 aa)
	CAEBREN_24799	Uncharacterized protein. (264 aa)
	CAEBREN_00460	Uncharacterized protein. (363 aa)
	CAEBREN_01516	WSC domain-containing protein. (806 aa)
	CAEBREN_11722	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family. (356 aa)
	CAEBREN_22825	Uncharacterized protein. (78 aa)
	CAEBREN_26213	Uncharacterized protein. (327 aa)
	Cbn-sqv-3	CBN-SQV-3 protein. (285 aa)
	CAEBREN_29021	Uncharacterized protein. (114 aa)
	CAEBREN_32680	Uncharacterized protein. (349 aa)
	CAEBREN_13527	Uncharacterized protein. (297 aa)
	CAEBREN_22727	Uncharacterized protein. (318 aa)
	CAEBREN_23649	Hexosyltransferase. (780 aa)
	CAEBREN_25725	Hexosyltransferase. (869 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00460	CAEBREN_08795	G0NFU9	G0P1S5	Uncharacterized protein.	Hexosyltransferase.	0.450
CAEBREN_00460	CAEBREN_11722	G0NFU9	G0N3Q2	Uncharacterized protein.	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	0.405
CAEBREN_00460	CAEBREN_14351	G0NFU9	G0PFU8	Uncharacterized protein.	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	0.405
CAEBREN_00460	CAEBREN_23649	G0NFU9	G0MFK6	Uncharacterized protein.	Hexosyltransferase.	0.450
CAEBREN_00460	CAEBREN_25725	G0NFU9	G0MGH3	Uncharacterized protein.	Hexosyltransferase.	0.562
CAEBREN_01516	CAEBREN_08795	G0NBM8	G0P1S5	WSC domain-containing protein.	Hexosyltransferase.	0.559
CAEBREN_01516	CAEBREN_11722	G0NBM8	G0N3Q2	WSC domain-containing protein.	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	0.456
CAEBREN_01516	CAEBREN_14351	G0NBM8	G0PFU8	WSC domain-containing protein.	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	0.456
CAEBREN_01516	CAEBREN_23649	G0NBM8	G0MFK6	WSC domain-containing protein.	Hexosyltransferase.	0.559
CAEBREN_01516	Cbn-sqv-3	G0NBM8	G0MKA7	WSC domain-containing protein.	CBN-SQV-3 protein.	0.970
CAEBREN_08795	CAEBREN_00460	G0P1S5	G0NFU9	Hexosyltransferase.	Uncharacterized protein.	0.450
CAEBREN_08795	CAEBREN_01516	G0P1S5	G0NBM8	Hexosyltransferase.	WSC domain-containing protein.	0.559
CAEBREN_08795	CAEBREN_10412	G0P1S5	G0MJ82	Hexosyltransferase.	Uncharacterized protein.	0.450
CAEBREN_08795	CAEBREN_11721	G0P1S5	G0P875	Hexosyltransferase.	Uncharacterized protein.	0.450
CAEBREN_08795	CAEBREN_11722	G0P1S5	G0N3Q2	Hexosyltransferase.	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	0.654
CAEBREN_08795	CAEBREN_13527	G0P1S5	G0M9E4	Hexosyltransferase.	Uncharacterized protein.	0.450
CAEBREN_08795	CAEBREN_14282	G0P1S5	G0NIR8	Hexosyltransferase.	Uncharacterized protein.	0.450
CAEBREN_08795	CAEBREN_14351	G0P1S5	G0PFU8	Hexosyltransferase.	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	0.654
CAEBREN_08795	CAEBREN_18706	G0P1S5	G0NZQ7	Hexosyltransferase.	Uncharacterized protein.	0.450
CAEBREN_08795	CAEBREN_20023	G0P1S5	G0NVK2	Hexosyltransferase.	Uncharacterized protein.	0.450

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