(59 nodes) Clathrin binding network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_20123	ENTH domain-containing protein. (323 aa)
	CAEBREN_30492	Uncharacterized protein. (295 aa)
	CAEBREN_05468	Adaptin_N domain-containing protein. (96 aa)
	CAEBREN_32125	Uncharacterized protein. (175 aa)
	Cbn-dab-1	CBN-DAB-1 protein. (446 aa)
	CAEBREN_23480	Uncharacterized protein. (1378 aa)
	CAEBREN_13475	Uncharacterized protein. (259 aa)
	CAEBREN_31076	C2 domain-containing protein. (183 aa)
	CAEBREN_12204	Uncharacterized protein. (367 aa)
	CAEBREN_04097	ENTH domain-containing protein. (550 aa)
	CAEBREN_23854	Adaptin_N domain-containing protein. (136 aa)
	CAEBREN_07821	Adaptin_N domain-containing protein. (332 aa)
	CAEBREN_32581	Uncharacterized protein. (200 aa)
	CAEBREN_25368	C2 domain-containing protein. (287 aa)
	CAEBREN_29988	ENTH domain-containing protein. (414 aa)
	Cbn-snt-4	CBN-SNT-4 protein. (382 aa)
	CAEBREN_20009	Uncharacterized protein. (1678 aa)
	CAEBREN_16898	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (426 aa)
	CAEBREN_23943	Uncharacterized protein. (309 aa)
	CAEBREN_08328	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (422 aa)
	CAEBREN_20723	Uncharacterized protein. (2340 aa)
	CAEBREN_09828	Uncharacterized protein. (1231 aa)
	CAEBREN_32094	Uncharacterized protein. (442 aa)
	CAEBREN_07224	C2 domain-containing protein. (482 aa)
	CAEBREN_12922	Uncharacterized protein. (99 aa)
	CAEBREN_08070	ENTH domain-containing protein. (431 aa)
	CAEBREN_01658	J domain-containing protein. (169 aa)
	Cbn-dnj-25	CBN-DNJ-25 protein. (690 aa)
	CAEBREN_31714	PID domain-containing protein. (759 aa)
	CAEBREN_13681	ENTH domain-containing protein. (298 aa)
	CAEBREN_21561	Uncharacterized protein. (80 aa)
	CAEBREN_22418	Adaptin_N domain-containing protein. (554 aa)
	CAEBREN_13036	Adaptin_N domain-containing protein. (589 aa)
	CAEBREN_06541	Uncharacterized protein. (468 aa)
	CAEBREN_08195	C2 domain-containing protein. (183 aa)
	CAEBREN_31518	AP-1 complex subunit gamma. (814 aa)
	CAEBREN_13957	Uncharacterized protein. (131 aa)
	CAEBREN_20348	SPK domain-containing protein. (298 aa)
	CAEBREN_25889	Uncharacterized protein. (544 aa)
	CAEBREN_14617	Uncharacterized protein. (633 aa)
	CAEBREN_28935	PID domain-containing protein. (486 aa)
	CAEBREN_31448	Uncharacterized protein. (366 aa)
	CAEBREN_15803	Uncharacterized protein. (366 aa)
	Cbn-clic-1	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (223 aa)
	CAEBREN_15604	Uncharacterized protein. (553 aa)
	CAEBREN_21287	ENTH domain-containing protein. (496 aa)
	CAEBREN_18022	PID domain-containing protein. (505 aa)
	CAEBREN_24879	AP complex subunit beta. (953 aa)
	Cbn-chc-1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1682 aa)
	CAEBREN_02269	Uncharacterized protein. (335 aa)
	CAEBREN_13964	Uncharacterized protein. (338 aa)
	Cbn-apa-2	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (923 aa)
	CAEBREN_20039	Uncharacterized protein. (926 aa)
	Cbn-snt-6	CBN-SNT-6 protein. (373 aa)
	CAEBREN_26020	C2 domain-containing protein. (429 aa)
	CAEBREN_17069	Uncharacterized protein. (466 aa)
	CAEBREN_21939	Uncharacterized protein. (402 aa)
	Cbn-aps-2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	Cbn-dpy-23	CBN-DPY-23 protein; Belongs to the adaptor complexes medium subunit family. (435 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_01658	CAEBREN_04097	G0NKL9	G0PCP8	J domain-containing protein.	ENTH domain-containing protein.	0.759
CAEBREN_01658	CAEBREN_05468	G0NKL9	G0PLG6	J domain-containing protein.	Adaptin_N domain-containing protein.	0.653
CAEBREN_01658	CAEBREN_06541	G0NKL9	G0ND65	J domain-containing protein.	Uncharacterized protein.	0.653
CAEBREN_01658	CAEBREN_07821	G0NKL9	G0PAS0	J domain-containing protein.	Adaptin_N domain-containing protein.	0.653
CAEBREN_01658	CAEBREN_08328	G0NKL9	G0NSN8	J domain-containing protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.728
CAEBREN_01658	CAEBREN_13036	G0NKL9	G0ND67	J domain-containing protein.	Adaptin_N domain-containing protein.	0.653
CAEBREN_01658	CAEBREN_16898	G0NKL9	G0NV05	J domain-containing protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.728
CAEBREN_01658	CAEBREN_20039	G0NKL9	G0MGA1	J domain-containing protein.	Uncharacterized protein.	0.806
CAEBREN_01658	CAEBREN_20348	G0NKL9	G0NBC5	J domain-containing protein.	SPK domain-containing protein.	0.653
CAEBREN_01658	CAEBREN_21287	G0NKL9	G0MQI7	J domain-containing protein.	ENTH domain-containing protein.	0.659
CAEBREN_01658	CAEBREN_22418	G0NKL9	G0ND69	J domain-containing protein.	Adaptin_N domain-containing protein.	0.653
CAEBREN_01658	CAEBREN_23854	G0NKL9	G0PAS1	J domain-containing protein.	Adaptin_N domain-containing protein.	0.653
CAEBREN_01658	CAEBREN_24879	G0NKL9	G0MKM1	J domain-containing protein.	AP complex subunit beta.	0.743
CAEBREN_01658	CAEBREN_25889	G0NKL9	G0NBB6	J domain-containing protein.	Uncharacterized protein.	0.653
CAEBREN_01658	CAEBREN_31518	G0NKL9	G0NCM6	J domain-containing protein.	AP-1 complex subunit gamma.	0.739
CAEBREN_01658	Cbn-apa-2	G0NKL9	G0MGV3	J domain-containing protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.653
CAEBREN_01658	Cbn-chc-1	G0NKL9	G0MKK4	J domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.987
CAEBREN_01658	Cbn-clic-1	G0NKL9	G0MTL5	J domain-containing protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.929
CAEBREN_01658	Cbn-dpy-23	G0NKL9	G0M832	J domain-containing protein.	CBN-DPY-23 protein; Belongs to the adaptor complexes medium subunit family.	0.450
CAEBREN_02269	CAEBREN_04097	G0MJF2	G0PCP8	Uncharacterized protein.	ENTH domain-containing protein.	0.786

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