(39 nodes) Cyclin binding network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_12967	Uncharacterized protein. (728 aa)
	CAEBREN_11965	Uncharacterized protein. (556 aa)
	CAEBREN_22323	Uncharacterized protein. (493 aa)
	CAEBREN_07757	Uncharacterized protein. (525 aa)
	CAEBREN_21124	Uncharacterized protein. (683 aa)
	Cbn-gadr-3	CBN-GADR-3 protein. (726 aa)
	CAEBREN_13281	Uncharacterized protein. (749 aa)
	CAEBREN_22013	Protein kinase domain-containing protein. (734 aa)
	CAEBREN_12862	Uncharacterized protein. (327 aa)
	CAEBREN_11727	Protein kinase domain-containing protein. (530 aa)
	CAEBREN_25990	Uncharacterized protein. (720 aa)
	CAEBREN_24406	Uncharacterized protein. (715 aa)
	CAEBREN_00798	Uncharacterized protein. (754 aa)
	CAEBREN_03632	Uncharacterized protein. (794 aa)
	CAEBREN_24867	Uncharacterized protein. (705 aa)
	CAEBREN_19804	Uncharacterized protein. (730 aa)
	CAEBREN_22738	Uncharacterized protein. (530 aa)
	CAEBREN_14905	Uncharacterized protein. (607 aa)
	CAEBREN_18837	Uncharacterized protein. (539 aa)
	CAEBREN_18214	Uncharacterized protein. (545 aa)
	CAEBREN_23794	Uncharacterized protein. (531 aa)
	CAEBREN_16099	Uncharacterized protein. (537 aa)
	CAEBREN_10966	Uncharacterized protein. (537 aa)
	CAEBREN_13295	Uncharacterized protein. (529 aa)
	CAEBREN_28686	Uncharacterized protein. (683 aa)
	CAEBREN_04222	Uncharacterized protein. (539 aa)
	CAEBREN_12087	Uncharacterized protein. (545 aa)
	CAEBREN_06170	Uncharacterized protein. (226 aa)
	Cbn-zyg-11	CBN-ZYG-11 protein. (806 aa)
	CAEBREN_21584	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (333 aa)
	CAEBREN_09606	Uncharacterized protein. (701 aa)
	CAEBREN_19158	Protein kinase domain-containing protein. (530 aa)
	CAEBREN_31365	Uncharacterized protein. (493 aa)
	CAEBREN_00527	Uncharacterized protein. (717 aa)
	CAEBREN_13148	Uncharacterized protein. (697 aa)
	CAEBREN_05322	Uncharacterized protein. (689 aa)
	CAEBREN_20756	Uncharacterized protein. (714 aa)
	CAEBREN_10555	Uncharacterized protein. (726 aa)
	CAEBREN_11760	Uncharacterized protein. (701 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_11727	CAEBREN_22013	G0MM51	G0ME30	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.540
CAEBREN_19158	CAEBREN_22013	G0NV98	G0ME30	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.540
CAEBREN_21584	CAEBREN_22013	G0NVW6	G0ME30	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.512
CAEBREN_22013	CAEBREN_11727	G0ME30	G0MM51	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.540
CAEBREN_22013	CAEBREN_19158	G0ME30	G0NV98	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.540
CAEBREN_22013	CAEBREN_21584	G0ME30	G0NVW6	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.512

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