(43 nodes) Defecation network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_05504	Prohibitin. (294 aa)
	CAEBREN_32487	PDZ domain-containing protein. (683 aa)
	CAEBREN_30447	ANK_REP_REGION domain-containing protein. (190 aa)
	CAEBREN_29521	Uncharacterized protein. (74 aa)
	CAEBREN_30789	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (805 aa)
	CAEBREN_30468	Neur_chan_LBD domain-containing protein. (233 aa)
	CAEBREN_28066	LSDAT_euk domain-containing protein. (814 aa)
	CAEBREN_21755	Prohibitin. (195 aa)
	CAEBREN_32633	LSDAT_euk domain-containing protein. (1464 aa)
	CAEBREN_30230	Uncharacterized protein. (2865 aa)
	CAEBREN_30098	LSDAT_euk domain-containing protein. (509 aa)
	CAEBREN_19846	Prohibitin. (275 aa)
	Cbn-aex-1	CBN-AEX-1 protein. (985 aa)
	CAEBREN_31806	Peptidase_S8 domain-containing protein. (182 aa)
	Cbn-fat-3	CBN-FAT-3 protein. (443 aa)
	CAEBREN_30582	FA_desaturase domain-containing protein. (443 aa)
	CAEBREN_29382	Uncharacterized protein. (2869 aa)
	CAEBREN_32094	Uncharacterized protein. (442 aa)
	Cbn-pbo-5	CBN-PBO-5 protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (525 aa)
	CAEBREN_03333	Uncharacterized protein. (1990 aa)
	CAEBREN_12552	Uncharacterized protein. (1003 aa)
	Cbn-aex-5	CBN-AEX-5 protein. (424 aa)
	Cbn-lim-6	CBN-LIM-6 protein. (316 aa)
	CAEBREN_00367	UDENN domain-containing protein. (1447 aa)
	CAEBREN_03873	F-box domain-containing protein. (460 aa)
	Cbn-unc-10	CBN-UNC-10 protein. (1638 aa)
	CAEBREN_31624	Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family. (623 aa)
	CAEBREN_00120	Neur_chan_memb domain-containing protein. (338 aa)
	CAEBREN_32052	Uncharacterized protein. (798 aa)
	Cbn-crt-1	Calreticulin. (396 aa)
	CAEBREN_11228	Calreticulin. (396 aa)
	Cbn-nuo-1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. (479 aa)
	Cbn-shn-1	CBN-SHN-1 protein. (1110 aa)
	CAEBREN_01221	POLAc domain-containing protein. (581 aa)
	Cbn-unc-16	CBN-UNC-16 protein. (1149 aa)
	CAEBREN_05257	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (777 aa)
	Cbn-ten-1	CBN-TEN-1 protein. (1490 aa)
	CAEBREN_30078	Uncharacterized protein. (948 aa)
	CAEBREN_21863	Uncharacterized protein. (2732 aa)
	CAEBREN_28975	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (537 aa)
	Cbn-atp-2	CBN-ATP-2 protein. (307 aa)
	Cbn-flr-4	CBN-FLR-4 protein. (491 aa)
	Cbn-hid-1	CBN-HID-1 protein. (726 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00120	Cbn-pbo-5	G0MZG6	G0NKR0	Neur_chan_memb domain-containing protein.	CBN-PBO-5 protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.566
CAEBREN_00367	CAEBREN_12552	G0N7K3	G0NCX0	UDENN domain-containing protein.	Uncharacterized protein.	0.566
CAEBREN_00367	Cbn-aex-1	G0N7K3	G0P115	UDENN domain-containing protein.	CBN-AEX-1 protein.	0.566
CAEBREN_03333	CAEBREN_29382	G0NK65	G0NRS2	Uncharacterized protein.	Uncharacterized protein.	0.633
CAEBREN_03333	CAEBREN_30230	G0NK65	G0P6X0	Uncharacterized protein.	Uncharacterized protein.	0.633
CAEBREN_05257	CAEBREN_31806	G0MHL0	G0NVC9	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.	Peptidase_S8 domain-containing protein.	0.453
CAEBREN_05257	Cbn-aex-5	G0MHL0	G0NCB6	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.	CBN-AEX-5 protein.	0.453
CAEBREN_05257	Cbn-pbo-5	G0MHL0	G0NKR0	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.	CBN-PBO-5 protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.893
CAEBREN_05504	CAEBREN_19846	G0MZI3	G0P5G7	Prohibitin.	Prohibitin.	0.999
CAEBREN_05504	CAEBREN_28975	G0MZI3	G0MCJ4	Prohibitin.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.600
CAEBREN_05504	Cbn-atp-2	G0MZI3	G0MCE8	Prohibitin.	CBN-ATP-2 protein.	0.600
CAEBREN_05504	Cbn-nuo-1	G0MZI3	G0MVF5	Prohibitin.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.610
CAEBREN_11228	CAEBREN_19846	G0MXP2	G0P5G7	Calreticulin.	Prohibitin.	0.526
CAEBREN_11228	CAEBREN_29382	G0MXP2	G0NRS2	Calreticulin.	Uncharacterized protein.	0.569
CAEBREN_11228	CAEBREN_30230	G0MXP2	G0P6X0	Calreticulin.	Uncharacterized protein.	0.569
CAEBREN_12552	CAEBREN_00367	G0NCX0	G0N7K3	Uncharacterized protein.	UDENN domain-containing protein.	0.566
CAEBREN_12552	CAEBREN_31806	G0NCX0	G0NVC9	Uncharacterized protein.	Peptidase_S8 domain-containing protein.	0.570
CAEBREN_12552	Cbn-aex-5	G0NCX0	G0NCB6	Uncharacterized protein.	CBN-AEX-5 protein.	0.570
CAEBREN_19846	CAEBREN_05504	G0P5G7	G0MZI3	Prohibitin.	Prohibitin.	0.999
CAEBREN_19846	CAEBREN_11228	G0P5G7	G0MXP2	Prohibitin.	Calreticulin.	0.526

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