(69 nodes) Transport vesicle membrane network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-sec-24.1	CBN-SEC-24.1 protein. (203 aa)
	CAEBREN_29579	Uncharacterized protein. (385 aa)
	CAEBREN_32237	Uncharacterized protein. (817 aa)
	CAEBREN_31846	Uncharacterized protein. (809 aa)
	CAEBREN_31520	Uncharacterized protein. (983 aa)
	Cbn-sec-31	CBN-SEC-31 protein. (1089 aa)
	CAEBREN_05102	DUF1981 domain-containing protein. (630 aa)
	CAEBREN_28985	SEC7 domain-containing protein. (872 aa)
	Cbn-vti-1	CBN-VTI-1 protein. (221 aa)
	Cbn-sph-1	CBN-SPH-1 protein. (227 aa)
	Cbn-sar-1	CBN-SAR-1 protein. (134 aa)
	CAEBREN_17464	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
	CAEBREN_28165	Uncharacterized protein. (725 aa)
	CAEBREN_30609	Uncharacterized protein. (83 aa)
	CAEBREN_29045	Uncharacterized protein. (81 aa)
	CAEBREN_17280	Uncharacterized protein. (1646 aa)
	CAEBREN_32545	Uncharacterized protein. (827 aa)
	CAEBREN_20618	Uncharacterized protein. (990 aa)
	CAEBREN_30798	Uncharacterized protein. (417 aa)
	CAEBREN_08494	Uncharacterized protein. (812 aa)
	CAEBREN_26385	Uncharacterized protein. (1184 aa)
	CAEBREN_06360	Uncharacterized protein. (952 aa)
	CAEBREN_08328	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (422 aa)
	CAEBREN_22636	MFS domain-containing protein. (539 aa)
	CAEBREN_20723	Uncharacterized protein. (2340 aa)
	CAEBREN_09828	Uncharacterized protein. (1231 aa)
	CAEBREN_32094	Uncharacterized protein. (442 aa)
	CAEBREN_17466	MFS domain-containing protein. (539 aa)
	Cbn-npp-20	CBN-NPP-20 protein; Belongs to the WD repeat SEC13 family. (283 aa)
	CAEBREN_01700	Uncharacterized protein. (1337 aa)
	CAEBREN_09080	Protein transport protein sec16. (1307 aa)
	Cbn-sec-22	CBN-SEC-22 protein; Belongs to the synaptobrevin family. (213 aa)
	CAEBREN_30179	Uncharacterized protein. (766 aa)
	CAEBREN_29927	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (290 aa)
	CAEBREN_29153	Uncharacterized protein. (239 aa)
	CAEBREN_13873	Uncharacterized protein. (419 aa)
	CAEBREN_31518	AP-1 complex subunit gamma. (814 aa)
	CAEBREN_02463	Uncharacterized protein. (1668 aa)
	Cbn-scp-1	CBN-SCP-1 protein. (1084 aa)
	Cbn-sel-9	CBN-SEL-9 protein. (204 aa)
	CAEBREN_17589	Uncharacterized protein. (285 aa)
	CAEBREN_11096	V-SNARE coiled-coil homology domain-containing protein. (108 aa)
	Cbn-cat-1	CBN-CAT-1 protein. (551 aa)
	CAEBREN_26020	C2 domain-containing protein. (429 aa)
	CAEBREN_25372	Uncharacterized protein. (166 aa)
	CAEBREN_03926	Vacuolar ATPase assembly integral membrane protein VMA21 homolog; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family. (91 aa)
	Cbn-odr-4	CBN-ODR-4 protein. (443 aa)
	CAEBREN_19912	Uncharacterized protein. (944 aa)
	Cbn-memb-1	CBN-MEMB-1 protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (213 aa)
	Cbn-sec-16	Protein transport protein sec16. (1255 aa)
	Cbn-eat-4	CBN-EAT-4 protein. (644 aa)
	CAEBREN_04889	EH domain-containing protein. (372 aa)
	CAEBREN_17810	Aa_trans domain-containing protein. (488 aa)
	Cbn-chc-1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1682 aa)
	Cbn-vglu-2	CBN-VGLU-2 protein. (575 aa)
	CAEBREN_05098	V-SNARE coiled-coil homology domain-containing protein. (115 aa)
	Cbn-clic-1	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (223 aa)
	CAEBREN_15803	Uncharacterized protein. (366 aa)
	CAEBREN_11647	Uncharacterized protein. (1047 aa)
	Cbn-memb-2	CBN-MEMB-2 protein. (146 aa)
	Cbn-aps-1	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (157 aa)
	CAEBREN_31448	Uncharacterized protein. (366 aa)
	Cbn-sec-23	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (810 aa)
	CAEBREN_25380	Synaptogyrin. (248 aa)
	CAEBREN_29006	Uncharacterized protein. (838 aa)
	CAEBREN_31385	Uncharacterized protein. (169 aa)
	CAEBREN_30522	WD_REPEATS_REGION domain-containing protein. (809 aa)
	CAEBREN_29867	Uncharacterized protein. (340 aa)
	CAEBREN_12204	Uncharacterized protein. (367 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_01700	CAEBREN_30798	G0NJA4	G0NYB9	Uncharacterized protein.	Uncharacterized protein.	0.558
CAEBREN_01700	Cbn-sph-1	G0NJA4	G0P4R7	Uncharacterized protein.	CBN-SPH-1 protein.	0.536
CAEBREN_02463	CAEBREN_05098	G0NCU2	G0MP40	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.762
CAEBREN_02463	CAEBREN_09828	G0NCU2	G0NRT2	Uncharacterized protein.	Uncharacterized protein.	0.869
CAEBREN_02463	CAEBREN_11096	G0NCU2	B6VBI7	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.762
CAEBREN_02463	CAEBREN_17466	G0NCU2	G0NLY6	Uncharacterized protein.	MFS domain-containing protein.	0.833
CAEBREN_02463	CAEBREN_20723	G0NCU2	G0NRT3	Uncharacterized protein.	Uncharacterized protein.	0.869
CAEBREN_02463	CAEBREN_22636	G0NCU2	G0NRX1	Uncharacterized protein.	MFS domain-containing protein.	0.833
CAEBREN_02463	CAEBREN_26020	G0NCU2	G0MAY9	Uncharacterized protein.	C2 domain-containing protein.	0.785
CAEBREN_02463	CAEBREN_30798	G0NCU2	G0NYB9	Uncharacterized protein.	Uncharacterized protein.	0.751
CAEBREN_02463	CAEBREN_31448	G0NCU2	G0MYW8	Uncharacterized protein.	Uncharacterized protein.	0.573
CAEBREN_02463	CAEBREN_32094	G0NCU2	G0NQX7	Uncharacterized protein.	Uncharacterized protein.	0.864
CAEBREN_02463	Cbn-cat-1	G0NCU2	G0M6I7	Uncharacterized protein.	CBN-CAT-1 protein.	0.695
CAEBREN_02463	Cbn-eat-4	G0NCU2	G0MJV9	Uncharacterized protein.	CBN-EAT-4 protein.	0.828
CAEBREN_02463	Cbn-vglu-2	G0NCU2	G0MLG6	Uncharacterized protein.	CBN-VGLU-2 protein.	0.519
CAEBREN_04889	CAEBREN_05098	G0MKB0	G0MP40	EH domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.608
CAEBREN_04889	CAEBREN_11096	G0MKB0	B6VBI7	EH domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.608
CAEBREN_04889	CAEBREN_26020	G0MKB0	G0MAY9	EH domain-containing protein.	C2 domain-containing protein.	0.450
CAEBREN_04889	CAEBREN_31448	G0MKB0	G0MYW8	EH domain-containing protein.	Uncharacterized protein.	0.450
CAEBREN_04889	CAEBREN_31518	G0MKB0	G0NCM6	EH domain-containing protein.	AP-1 complex subunit gamma.	0.729

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