(22 nodes) Intraciliary transport particle B network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-ift-81	CBN-IFT-81 protein. (654 aa)
	Cbn-osm-6	CBN-OSM-6 protein. (471 aa)
	CAEBREN_10651	Uncharacterized protein. (551 aa)
	CAEBREN_25455	Uncharacterized protein. (542 aa)
	Cbn-dyf-11	CBN-DYF-11 protein. (551 aa)
	Cbn-che-2	CBN-CHE-2 protein. (761 aa)
	CAEBREN_32658	Uncharacterized protein. (385 aa)
	Cbn-dyf-2	CBN-DYF-2 protein. (681 aa)
	CAEBREN_15180	Uncharacterized protein. (514 aa)
	Cbn-dyf-6	CBN-DYF-6 protein. (325 aa)
	CAEBREN_13813	Uncharacterized protein. (1738 aa)
	CAEBREN_07292	Uncharacterized protein. (129 aa)
	Cbn-osm-5	CBN-OSM-5 protein. (825 aa)
	CAEBREN_14348	VWFA domain-containing protein. (372 aa)
	CAEBREN_16930	Uncharacterized protein. (626 aa)
	CAEBREN_32059	TPR_REGION domain-containing protein. (680 aa)
	CAEBREN_15478	Uncharacterized protein. (129 aa)
	Cbn-che-13	CBN-CHE-13 protein. (253 aa)
	CAEBREN_16460	Uncharacterized protein. (129 aa)
	CAEBREN_29399	TPR_REGION domain-containing protein. (662 aa)
	CAEBREN_29520	Uncharacterized protein. (463 aa)
	CAEBREN_06971	Uncharacterized protein. (278 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_06971	CAEBREN_07292	G0PJC4	G0MF46	Uncharacterized protein.	Uncharacterized protein.	0.906
CAEBREN_06971	CAEBREN_10651	G0PJC4	G0N9T0	Uncharacterized protein.	Uncharacterized protein.	0.979
CAEBREN_06971	CAEBREN_13813	G0PJC4	G0MHI3	Uncharacterized protein.	Uncharacterized protein.	0.997
CAEBREN_06971	CAEBREN_14348	G0PJC4	G0NR18	Uncharacterized protein.	VWFA domain-containing protein.	0.908
CAEBREN_06971	CAEBREN_15180	G0PJC4	G0ML33	Uncharacterized protein.	Uncharacterized protein.	0.857
CAEBREN_06971	CAEBREN_15478	G0PJC4	G0NXZ8	Uncharacterized protein.	Uncharacterized protein.	0.575
CAEBREN_06971	CAEBREN_16460	G0PJC4	G0P8J5	Uncharacterized protein.	Uncharacterized protein.	0.906
CAEBREN_06971	CAEBREN_16930	G0PJC4	G0NR21	Uncharacterized protein.	Uncharacterized protein.	0.979
CAEBREN_06971	CAEBREN_25455	G0PJC4	G0N9S6	Uncharacterized protein.	Uncharacterized protein.	0.978
CAEBREN_06971	CAEBREN_29399	G0PJC4	G0PIR1	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.977
CAEBREN_06971	CAEBREN_29520	G0PJC4	G0PJ72	Uncharacterized protein.	Uncharacterized protein.	0.989
CAEBREN_06971	CAEBREN_32059	G0PJC4	G0NUF2	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.977
CAEBREN_06971	CAEBREN_32658	G0PJC4	G0N282	Uncharacterized protein.	Uncharacterized protein.	0.997
CAEBREN_06971	Cbn-che-2	G0PJC4	G0N7H4	Uncharacterized protein.	CBN-CHE-2 protein.	0.998
CAEBREN_06971	Cbn-dyf-11	G0PJC4	G0N7K4	Uncharacterized protein.	CBN-DYF-11 protein.	0.998
CAEBREN_06971	Cbn-dyf-2	G0PJC4	G0ML35	Uncharacterized protein.	CBN-DYF-2 protein.	0.823
CAEBREN_06971	Cbn-dyf-6	G0PJC4	G0MHQ5	Uncharacterized protein.	CBN-DYF-6 protein.	0.992
CAEBREN_06971	Cbn-ift-81	G0PJC4	G0M8M0	Uncharacterized protein.	CBN-IFT-81 protein.	0.996
CAEBREN_06971	Cbn-osm-5	G0PJC4	G0M6Y3	Uncharacterized protein.	CBN-OSM-5 protein.	0.999
CAEBREN_06971	Cbn-osm-6	G0PJC4	G0NGX5	Uncharacterized protein.	CBN-OSM-6 protein.	0.989

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