(33 nodes) Cytoplasmic microtubule organization network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_25277	Uncharacterized protein. (923 aa)
	CAEBREN_21070	Uncharacterized protein. (99 aa)
	CAEBREN_19893	CAP-Gly domain-containing protein. (1296 aa)
	CAEBREN_02144	Uncharacterized protein. (4902 aa)
	CAEBREN_28411	Uncharacterized protein. (650 aa)
	Cbn-dcn-1	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. (293 aa)
	CAEBREN_01277	Uncharacterized protein. (2626 aa)
	CAEBREN_32604	Uncharacterized protein. (493 aa)
	Cbn-cls-1	CBN-CLS-1 protein. (1365 aa)
	CAEBREN_03619	CAP-Gly domain-containing protein. (961 aa)
	Cbn-tbg-1	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (461 aa)
	Cbn-atx-2	CBN-ATX-2 protein. (989 aa)
	Cbn-klp-7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (724 aa)
	CAEBREN_18491	Uncharacterized protein. (1970 aa)
	CAEBREN_01229	Calponin-homology (CH) domain-containing protein. (782 aa)
	CAEBREN_12298	Calponin-homology (CH) domain-containing protein. (865 aa)
	Cbn-mec-7	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (441 aa)
	Cbn-evl-20	CBN-EVL-20 protein; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	CAEBREN_31876	Uncharacterized protein. (195 aa)
	CAEBREN_29778	Uncharacterized protein. (514 aa)
	CAEBREN_30981	Uncharacterized protein. (259 aa)
	CAEBREN_31601	Calponin-homology (CH) domain-containing protein. (782 aa)
	CAEBREN_30051	Dynein_C domain-containing protein. (318 aa)
	CAEBREN_29886	Uncharacterized protein. (2099 aa)
	CAEBREN_32350	DHC_N1 domain-containing protein. (995 aa)
	CAEBREN_20999	Uncharacterized protein. (1126 aa)
	CAEBREN_00358	CAP-Gly domain-containing protein. (1317 aa)
	CAEBREN_09933	Uncharacterized protein. (1108 aa)
	CAEBREN_08432	Gamma-tubulin complex component. (795 aa)
	CAEBREN_03049	Gamma-tubulin complex component. (772 aa)
	CAEBREN_18092	Uncharacterized protein. (153 aa)
	CAEBREN_25494	Uncharacterized protein. (1253 aa)
	CAEBREN_32376	ASH domain-containing protein. (542 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00358	CAEBREN_03619	G0P6U3	G0MJY6	CAP-Gly domain-containing protein.	CAP-Gly domain-containing protein.	0.919
CAEBREN_00358	CAEBREN_20999	G0P6U3	G0P9D0	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.940
CAEBREN_00358	CAEBREN_29886	G0P6U3	G0PBU8	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.940
CAEBREN_00358	CAEBREN_30051	G0P6U3	G0PBU9	CAP-Gly domain-containing protein.	Dynein_C domain-containing protein.	0.940
CAEBREN_00358	CAEBREN_32350	G0P6U3	G0P9D1	CAP-Gly domain-containing protein.	DHC_N1 domain-containing protein.	0.940
CAEBREN_00358	Cbn-cls-1	G0P6U3	G0MG18	CAP-Gly domain-containing protein.	CBN-CLS-1 protein.	0.476
CAEBREN_00358	Cbn-klp-7	G0P6U3	G0ML05	CAP-Gly domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.753
CAEBREN_01229	Cbn-tbg-1	G0MPW9	G0MK75	Calponin-homology (CH) domain-containing protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.532
CAEBREN_01277	CAEBREN_32376	G0MES5	G0NXR7	Uncharacterized protein.	ASH domain-containing protein.	0.592
CAEBREN_01277	Cbn-atx-2	G0MES5	G0MKU5	Uncharacterized protein.	CBN-ATX-2 protein.	0.495
CAEBREN_02144	CAEBREN_09933	G0NIF2	G0P4I5	Uncharacterized protein.	Uncharacterized protein.	0.584
CAEBREN_03049	CAEBREN_09933	G0P3L0	G0P4I5	Gamma-tubulin complex component.	Uncharacterized protein.	0.580
CAEBREN_03049	CAEBREN_25277	G0P3L0	G0N9B0	Gamma-tubulin complex component.	Uncharacterized protein.	0.576
CAEBREN_03049	CAEBREN_29778	G0P3L0	G0PN19	Gamma-tubulin complex component.	Uncharacterized protein.	0.576
CAEBREN_03049	CAEBREN_32604	G0P3L0	G0MFU7	Gamma-tubulin complex component.	Uncharacterized protein.	0.563
CAEBREN_03049	Cbn-tbg-1	G0P3L0	G0MK75	Gamma-tubulin complex component.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.993
CAEBREN_03619	CAEBREN_00358	G0MJY6	G0P6U3	CAP-Gly domain-containing protein.	CAP-Gly domain-containing protein.	0.919
CAEBREN_03619	CAEBREN_19893	G0MJY6	G0NRR6	CAP-Gly domain-containing protein.	CAP-Gly domain-containing protein.	0.919
CAEBREN_03619	CAEBREN_20999	G0MJY6	G0P9D0	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.694
CAEBREN_03619	CAEBREN_29886	G0MJY6	G0PBU8	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.694

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