(31 nodes) Positive regulation of growth rate network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_01621	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1229 aa)
	CAEBREN_30789	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (805 aa)
	CAEBREN_32125	Uncharacterized protein. (175 aa)
	Cbn-dab-1	CBN-DAB-1 protein. (446 aa)
	CAEBREN_04088	Cyclic nucleotide-binding domain-containing protein. (770 aa)
	CAEBREN_29703	Uncharacterized protein. (466 aa)
	CAEBREN_29587	Uncharacterized protein. (375 aa)
	CAEBREN_18695	PKS_ER domain-containing protein. (366 aa)
	Cbn-rbd-1	CBN-RBD-1 protein. (876 aa)
	CAEBREN_10676	Uncharacterized protein. (152 aa)
	CAEBREN_30514	C2H2-type domain-containing protein. (950 aa)
	CAEBREN_10247	ATP_Ca_trans_C domain-containing protein. (77 aa)
	CAEBREN_31459	PKS_ER domain-containing protein. (383 aa)
	Cbn-mboa-6	CBN-MBOA-6 protein; Belongs to the membrane-bound acyltransferase family. (475 aa)
	CAEBREN_13957	Uncharacterized protein. (131 aa)
	Cbn-hlh-14	CBN-HLH-14 protein. (153 aa)
	CAEBREN_02139	BTB domain-containing protein. (611 aa)
	Cbn-arr-1	CBN-ARR-1 protein. (435 aa)
	CAEBREN_28935	PID domain-containing protein. (486 aa)
	CAEBREN_26021	Uncharacterized protein. (801 aa)
	CAEBREN_18745	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (699 aa)
	CAEBREN_09737	Uncharacterized protein. (168 aa)
	CAEBREN_30646	Uncharacterized protein. (840 aa)
	Cbn-mcd-1	CBN-MCD-1 protein. (947 aa)
	CAEBREN_14048	Uncharacterized protein. (173 aa)
	CAEBREN_06253	Uncharacterized protein. (776 aa)
	Cbn-tax-4	CBN-TAX-4 protein. (751 aa)
	Cbn-clk-1	5-demethoxyubiquinone hydroxylase, mitochondrial; Catalyzes the hydroxylation of 2-polyprenyl-3-methyl-6- methoxy-1,4-benzoquinol (DMQH2) during ubiquinone biosynthesis. Has also a structural role in the COQ enzyme complex, stabilizing other COQ polypeptides. Involved in lifespan determination in a ubiquinone- independent manner. (187 aa)
	Cbn-ncr-1	CBN-NCR-1 protein. (1381 aa)
	Cbn-peb-1	CBN-PEB-1 protein. (425 aa)
	CAEBREN_30726	Protein kinase domain-containing protein. (820 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_04088	Cbn-tax-4	G0PHM5	G0MJW8	Cyclic nucleotide-binding domain-containing protein.	CBN-TAX-4 protein.	0.768
CAEBREN_13957	Cbn-arr-1	G0NBI2	G0N7N0	Uncharacterized protein.	CBN-ARR-1 protein.	0.626
CAEBREN_18745	Cbn-arr-1	G0MYY6	G0N7N0	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	CBN-ARR-1 protein.	0.913
CAEBREN_18745	Cbn-tax-4	G0MYY6	G0MJW8	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	CBN-TAX-4 protein.	0.533
CAEBREN_28935	Cbn-arr-1	G0N455	G0N7N0	PID domain-containing protein.	CBN-ARR-1 protein.	0.626
CAEBREN_32125	Cbn-arr-1	G0PLA3	G0N7N0	Uncharacterized protein.	CBN-ARR-1 protein.	0.626
Cbn-arr-1	CAEBREN_13957	G0N7N0	G0NBI2	CBN-ARR-1 protein.	Uncharacterized protein.	0.626
Cbn-arr-1	CAEBREN_18745	G0N7N0	G0MYY6	CBN-ARR-1 protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.913
Cbn-arr-1	CAEBREN_28935	G0N7N0	G0N455	CBN-ARR-1 protein.	PID domain-containing protein.	0.626
Cbn-arr-1	CAEBREN_32125	G0N7N0	G0PLA3	CBN-ARR-1 protein.	Uncharacterized protein.	0.626
Cbn-arr-1	Cbn-dab-1	G0N7N0	G0PKN6	CBN-ARR-1 protein.	CBN-DAB-1 protein.	0.626
Cbn-arr-1	Cbn-tax-4	G0N7N0	G0MJW8	CBN-ARR-1 protein.	CBN-TAX-4 protein.	0.513
Cbn-dab-1	Cbn-arr-1	G0PKN6	G0N7N0	CBN-DAB-1 protein.	CBN-ARR-1 protein.	0.626
Cbn-tax-4	CAEBREN_04088	G0MJW8	G0PHM5	CBN-TAX-4 protein.	Cyclic nucleotide-binding domain-containing protein.	0.768
Cbn-tax-4	CAEBREN_18745	G0MJW8	G0MYY6	CBN-TAX-4 protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.533
Cbn-tax-4	Cbn-arr-1	G0MJW8	G0N7N0	CBN-TAX-4 protein.	CBN-ARR-1 protein.	0.513

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About