(65 nodes) Cell cycle phase transition network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_16235	Uncharacterized protein; Belongs to the cyclin family. (499 aa)
	CAEBREN_09297	Rhodanese domain-containing protein. (511 aa)
	CAEBREN_12161	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (360 aa)
	Cbn-cdk-5	CBN-CDK-5 protein; Belongs to the protein kinase superfamily. (308 aa)
	CAEBREN_14965	TPR_REGION domain-containing protein. (796 aa)
	Cbn-cye-1	CBN-CYE-1 protein; Belongs to the cyclin family. (455 aa)
	CAEBREN_09292	Uncharacterized protein; Belongs to the cyclin family. (432 aa)
	Cbn-cdk-1	CBN-CDK-1 protein; Belongs to the protein kinase superfamily. (314 aa)
	Cbn-pph-6	Serine/threonine-protein phosphatase. (334 aa)
	CAEBREN_11727	Protein kinase domain-containing protein. (530 aa)
	CAEBREN_00673	CYCLIN domain-containing protein; Belongs to the cyclin family. (309 aa)
	Cbn-skpt-1	CBN-SKPT-1 protein. (424 aa)
	CAEBREN_21152	Uncharacterized protein. (138 aa)
	CAEBREN_08446	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (329 aa)
	Cbn-mat-2	CBN-MAT-2 protein. (1462 aa)
	CAEBREN_24834	Uncharacterized protein. (320 aa)
	CAEBREN_04781	Uncharacterized protein. (648 aa)
	CAEBREN_12772	FHA domain-containing protein. (1143 aa)
	CAEBREN_17983	ANK_REP_REGION domain-containing protein. (717 aa)
	Cbn-mat-3	CBN-MAT-3 protein. (687 aa)
	Cbn-apc-2	CBN-APC-2 protein; Belongs to the cullin family. (728 aa)
	CAEBREN_25576	Uncharacterized protein. (431 aa)
	Cbn-fzr-1	CBN-FZR-1 protein. (519 aa)
	CAEBREN_04424	Uncharacterized protein. (645 aa)
	CAEBREN_22827	Uncharacterized protein. (471 aa)
	CAEBREN_06732	Uncharacterized protein. (247 aa)
	CAEBREN_00250	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (357 aa)
	CAEBREN_12491	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (532 aa)
	CAEBREN_14236	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (482 aa)
	Cbn-cyb-3	CBN-CYB-3 protein; Belongs to the cyclin family. (379 aa)
	CAEBREN_12206	Protein kinase domain-containing protein. (303 aa)
	CAEBREN_24427	Rhodanese domain-containing protein. (264 aa)
	CAEBREN_14483	Uncharacterized protein. (119 aa)
	CAEBREN_31860	Uncharacterized protein. (2314 aa)
	Cbn-lin-29	CBN-LIN-29 protein. (488 aa)
	Cbn-cyd-1	CBN-CYD-1 protein; Belongs to the cyclin family. (418 aa)
	CAEBREN_24328	Uncharacterized protein; Belongs to the cyclin family. (391 aa)
	CAEBREN_03480	Protein kinase domain-containing protein. (402 aa)
	CAEBREN_19158	Protein kinase domain-containing protein. (530 aa)
	CAEBREN_21584	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (333 aa)
	CAEBREN_09093	TPR_REGION domain-containing protein. (670 aa)
	Cbn-cdc-25.1	CBN-CDC-25.1 protein. (603 aa)
	CAEBREN_24821	Uncharacterized protein. (661 aa)
	CAEBREN_01602	Uncharacterized protein. (488 aa)
	CAEBREN_18584	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (532 aa)
	CAEBREN_21571	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (347 aa)
	CAEBREN_10744	Uncharacterized protein. (917 aa)
	CAEBREN_24848	Uncharacterized protein. (911 aa)
	CAEBREN_00581	Protein kinase domain-containing protein. (674 aa)
	CAEBREN_02864	TPR_REGION domain-containing protein. (795 aa)
	CAEBREN_30327	Uncharacterized protein. (877 aa)
	CAEBREN_04884	Rhodanese domain-containing protein. (267 aa)
	CAEBREN_28570	Protein kinase domain-containing protein. (814 aa)
	Cbn-fzy-1	CBN-FZY-1 protein. (508 aa)
	CAEBREN_32610	Uncharacterized protein. (812 aa)
	CAEBREN_10807	Uncharacterized protein. (234 aa)
	Cbn-cdc-25.2	CBN-CDC-25.2 protein. (306 aa)
	CAEBREN_14487	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (418 aa)
	CAEBREN_22987	Uncharacterized protein. (471 aa)
	CAEBREN_28067	WD_REPEATS_REGION domain-containing protein. (708 aa)
	CAEBREN_28417	WD_REPEATS_REGION domain-containing protein. (361 aa)
	CAEBREN_20667	Rhodanese domain-containing protein. (349 aa)
	CAEBREN_28055	Uncharacterized protein. (319 aa)
	CAEBREN_29761	ANAPC8 domain-containing protein. (211 aa)
	CAEBREN_18999	Aminopeptidase. (884 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00250	CAEBREN_00581	G0NG27	G0P5P1	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein.	0.917
CAEBREN_00250	CAEBREN_01602	G0NG27	G0P013	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.782
CAEBREN_00250	CAEBREN_02864	G0NG27	G0P8L0	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	TPR_REGION domain-containing protein.	0.937
CAEBREN_00250	CAEBREN_04424	G0NG27	G0N6K3	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.714
CAEBREN_00250	CAEBREN_04884	G0NG27	G0PAN3	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Rhodanese domain-containing protein.	0.853
CAEBREN_00250	CAEBREN_06732	G0NG27	G0NCT6	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.523
CAEBREN_00250	CAEBREN_08446	G0NG27	G0MQY2	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.978
CAEBREN_00250	CAEBREN_09093	G0NG27	G0NYZ9	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	TPR_REGION domain-containing protein.	0.868
CAEBREN_00250	CAEBREN_09292	G0NG27	G0MJV3	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein; Belongs to the cyclin family.	0.946
CAEBREN_00250	CAEBREN_09297	G0NG27	G0M954	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Rhodanese domain-containing protein.	0.853
CAEBREN_00250	CAEBREN_10807	G0NG27	G0PD36	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.523
CAEBREN_00250	CAEBREN_11727	G0NG27	G0MM51	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein.	0.917
CAEBREN_00250	CAEBREN_12161	G0NG27	G0MAD7	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.978
CAEBREN_00250	CAEBREN_12206	G0NG27	G0NLL9	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein.	0.917
CAEBREN_00250	CAEBREN_12491	G0NG27	G0NH51	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.813
CAEBREN_00250	CAEBREN_14236	G0NG27	G0NJB1	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.946
CAEBREN_00250	CAEBREN_14487	G0NG27	G0PDD2	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.638
CAEBREN_00250	CAEBREN_14965	G0NG27	G0MF60	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	TPR_REGION domain-containing protein.	0.937
CAEBREN_00250	CAEBREN_16235	G0NG27	G0MJV2	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein; Belongs to the cyclin family.	0.945
CAEBREN_00250	CAEBREN_18584	G0NG27	G0P190	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.813

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