(13 nodes) Negative regulation of DNA recombination network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-dpy-28	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. (1467 aa)
	Cbn-his-24	CBN-HIS-24 protein. (214 aa)
	CAEBREN_04568	H15 domain-containing protein. (268 aa)
	CAEBREN_32636	Uncharacterized protein. (719 aa)
	Cbn-mut-2	CBN-MUT-2 protein. (397 aa)
	Cbn-mut-7	CBN-MUT-7 protein. (862 aa)
	CAEBREN_25454	Helicase ATP-binding domain-containing protein. (810 aa)
	CAEBREN_29920	Uncharacterized protein. (262 aa)
	CAEBREN_30887	Uncharacterized protein. (261 aa)
	CAEBREN_00658	Uncharacterized protein. (511 aa)
	CAEBREN_07182	Ubiquitin-like domain-containing protein. (520 aa)
	CAEBREN_13144	H15 domain-containing protein. (207 aa)
	hil-1	Histone H1. (237 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00658	CAEBREN_25454	G0P304	G0NY19	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.619
CAEBREN_07182	CAEBREN_25454	G0P3K4	G0NY19	Ubiquitin-like domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.619
CAEBREN_25454	CAEBREN_00658	G0NY19	G0P304	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.619
CAEBREN_25454	CAEBREN_07182	G0NY19	G0P3K4	Helicase ATP-binding domain-containing protein.	Ubiquitin-like domain-containing protein.	0.619
CAEBREN_25454	Cbn-dpy-28	G0NY19	G0ML01	Helicase ATP-binding domain-containing protein.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.480
CAEBREN_29920	CAEBREN_30887	G0PC33	G0P5A9	Uncharacterized protein.	Uncharacterized protein.	0.603
CAEBREN_29920	CAEBREN_32636	G0PC33	G0NKJ2	Uncharacterized protein.	Uncharacterized protein.	0.603
CAEBREN_29920	Cbn-mut-7	G0PC33	G0MK52	Uncharacterized protein.	CBN-MUT-7 protein.	0.936
CAEBREN_30887	CAEBREN_29920	G0P5A9	G0PC33	Uncharacterized protein.	Uncharacterized protein.	0.603
CAEBREN_30887	Cbn-mut-2	G0P5A9	G0NU13	Uncharacterized protein.	CBN-MUT-2 protein.	0.569
CAEBREN_30887	Cbn-mut-7	G0P5A9	G0MK52	Uncharacterized protein.	CBN-MUT-7 protein.	0.897
CAEBREN_32636	CAEBREN_29920	G0NKJ2	G0PC33	Uncharacterized protein.	Uncharacterized protein.	0.603
CAEBREN_32636	Cbn-mut-2	G0NKJ2	G0NU13	Uncharacterized protein.	CBN-MUT-2 protein.	0.569
CAEBREN_32636	Cbn-mut-7	G0NKJ2	G0MK52	Uncharacterized protein.	CBN-MUT-7 protein.	0.897
Cbn-dpy-28	CAEBREN_25454	G0ML01	G0NY19	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Helicase ATP-binding domain-containing protein.	0.480
Cbn-mut-2	CAEBREN_30887	G0NU13	G0P5A9	CBN-MUT-2 protein.	Uncharacterized protein.	0.569
Cbn-mut-2	CAEBREN_32636	G0NU13	G0NKJ2	CBN-MUT-2 protein.	Uncharacterized protein.	0.569
Cbn-mut-2	Cbn-mut-7	G0NU13	G0MK52	CBN-MUT-2 protein.	CBN-MUT-7 protein.	0.647
Cbn-mut-7	CAEBREN_29920	G0MK52	G0PC33	CBN-MUT-7 protein.	Uncharacterized protein.	0.936
Cbn-mut-7	CAEBREN_30887	G0MK52	G0P5A9	CBN-MUT-7 protein.	Uncharacterized protein.	0.897

page 1 of 2

Server load: low (20%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About