(38 nodes) Vesicle docking network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_21796	Uncharacterized protein. (118 aa)
	CAEBREN_19477	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (413 aa)
	CAEBREN_03557	Uncharacterized protein. (211 aa)
	Cbn-syx-17	CBN-SYX-17 protein. (250 aa)
	CAEBREN_23279	Uncharacterized protein. (204 aa)
	CAEBREN_06692	Uncharacterized protein. (205 aa)
	Cbn-syn-4	CBN-SYN-4 protein; Belongs to the syntaxin family. (255 aa)
	CAEBREN_06360	Uncharacterized protein. (952 aa)
	CAEBREN_28369	MAM domain-containing protein. (763 aa)
	CAEBREN_32293	MAM domain-containing protein. (616 aa)
	Cbn-syn-13	CBN-SYN-13 protein; Belongs to the syntaxin family. (247 aa)
	CAEBREN_22392	Sec8_exocyst domain-containing protein. (892 aa)
	CAEBREN_08912	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (555 aa)
	CAEBREN_19821	Uncharacterized protein. (201 aa)
	CAEBREN_17280	Uncharacterized protein. (1646 aa)
	CAEBREN_31215	t-SNARE coiled-coil homology domain-containing protein. (329 aa)
	CAEBREN_31520	Uncharacterized protein. (983 aa)
	CAEBREN_29867	Uncharacterized protein. (340 aa)
	CAEBREN_03012	Sec8_exocyst domain-containing protein. (878 aa)
	CAEBREN_28099	Uncharacterized protein. (435 aa)
	CAEBREN_02310	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (413 aa)
	CAEBREN_32424	Uncharacterized protein. (689 aa)
	CAEBREN_30856	Uncharacterized protein. (283 aa)
	CAEBREN_09471	Uncharacterized protein. (218 aa)
	Cbn-syx-3	CBN-SYX-3 protein; Belongs to the syntaxin family. (306 aa)
	Cbn-syx-2	CBN-SYX-2 protein. (299 aa)
	Cbn-unc-64	CBN-UNC-64 protein; Belongs to the syntaxin family. (293 aa)
	Cbn-vps-18	CBN-VPS-18 protein. (386 aa)
	CAEBREN_16288	Uncharacterized protein. (839 aa)
	Cbn-vps-11	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family. (861 aa)
	Cbn-unc-18	CBN-UNC-18 protein; Belongs to the STXBP/unc-18/SEC1 family. (590 aa)
	Cbn-mltn-9	CBN-MLTN-9 protein. (1063 aa)
	Cbn-rab-3	CBN-RAB-3 protein. (219 aa)
	CAEBREN_02463	Uncharacterized protein. (1668 aa)
	Cbn-mltn-8	CBN-MLTN-8 protein. (756 aa)
	CAEBREN_31864	Uncharacterized protein. (507 aa)
	CAEBREN_17793	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (291 aa)
	CAEBREN_17612	Uncharacterized protein; Belongs to the synaptobrevin family. (201 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_02310	CAEBREN_06360	G0PM09	G0NTH8	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.977
CAEBREN_02310	CAEBREN_08912	G0PM09	G0NYC9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.518
CAEBREN_02310	CAEBREN_17612	G0PM09	G0NGS4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.993
CAEBREN_02310	CAEBREN_17793	G0PM09	G0NFP6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.809
CAEBREN_02310	CAEBREN_21796	G0PM09	G0NGS5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.993
CAEBREN_02310	CAEBREN_28099	G0PM09	G0PK13	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.809
CAEBREN_02310	CAEBREN_28369	G0PM09	G0NUM8	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	MAM domain-containing protein.	0.960
CAEBREN_02310	CAEBREN_31215	G0PM09	G0P5E7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.678
CAEBREN_02310	CAEBREN_31520	G0PM09	G0P8Q3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.977
CAEBREN_02310	CAEBREN_31864	G0PM09	G0NET6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.809
CAEBREN_02310	CAEBREN_32293	G0PM09	G0PNY0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	MAM domain-containing protein.	0.960
CAEBREN_02310	CAEBREN_32424	G0PM09	G0PNG9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.809
CAEBREN_02310	Cbn-mltn-8	G0PM09	G0NET2	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	CBN-MLTN-8 protein.	0.809
CAEBREN_02310	Cbn-mltn-9	G0PM09	G0N6Z7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	CBN-MLTN-9 protein.	0.876
CAEBREN_02310	Cbn-syn-13	G0PM09	G0NUS7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	CBN-SYN-13 protein; Belongs to the syntaxin family.	0.916
CAEBREN_02310	Cbn-syn-4	G0PM09	G0NPG1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	CBN-SYN-4 protein; Belongs to the syntaxin family.	0.809
CAEBREN_02310	Cbn-syx-17	G0PM09	G0NK86	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	CBN-SYX-17 protein.	0.929
CAEBREN_02310	Cbn-syx-2	G0PM09	G0MAJ0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	CBN-SYX-2 protein.	0.876
CAEBREN_02310	Cbn-syx-3	G0PM09	G0M8M8	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	CBN-SYX-3 protein; Belongs to the syntaxin family.	0.809
CAEBREN_02310	Cbn-unc-18	G0PM09	G0MWJ9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	CBN-UNC-18 protein; Belongs to the STXBP/unc-18/SEC1 family.	0.518

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