(101 nodes) Tissue morphogenesis network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-vang-1	Vang-like protein. (531 aa)
	Cbn-lin-18	CBN-LIN-18 protein. (561 aa)
	CAEBREN_23432	SAP domain-containing protein. (769 aa)
	CAEBREN_21894	Uncharacterized protein. (565 aa)
	Cbn-tag-117	CBN-TAG-117 protein; Belongs to the MAGUK family. (658 aa)
	Cbn-gpn-1	CBN-GPN-1 protein; Belongs to the glypican family. (538 aa)
	CAEBREN_28411	Uncharacterized protein. (650 aa)
	CAEBREN_06523	Uncharacterized protein. (542 aa)
	CAEBREN_10626	Uncharacterized protein. (222 aa)
	Cbn-arx-6	Actin-related protein 2/3 complex subunit 4; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament; Belongs to the ARPC4 family. (169 aa)
	CAEBREN_02733	Homeobox domain-containing protein. (338 aa)
	CAEBREN_10404	Uncharacterized protein. (854 aa)
	CAEBREN_23649	Hexosyltransferase. (780 aa)
	CAEBREN_30488	Uncharacterized protein. (356 aa)
	CAEBREN_32185	Uncharacterized protein. (3082 aa)
	Cbn-dgn-2	CBN-DGN-2 protein. (391 aa)
	CAEBREN_24258	Peptidase S72 domain-containing protein. (388 aa)
	Cbn-dgn-1	CBN-DGN-1 protein. (589 aa)
	Cbn-sdn-1	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (297 aa)
	Cbn-kal-1	CBN-KAL-1 protein. (716 aa)
	Cbn-fozi-1	CBN-FOZI-1 protein. (757 aa)
	Cbn-sqv-3	CBN-SQV-3 protein. (285 aa)
	Cbn-toca-2	CBN-TOCA-2 protein. (639 aa)
	CAEBREN_18491	Uncharacterized protein. (1970 aa)
	CAEBREN_06253	Uncharacterized protein. (776 aa)
	Cbn-xnp-1	CBN-XNP-1 protein. (1429 aa)
	CAEBREN_30962	Uncharacterized protein. (313 aa)
	CAEBREN_19421	Uncharacterized protein. (885 aa)
	CAEBREN_01079	GATA-type domain-containing protein. (251 aa)
	CAEBREN_31364	BACK domain-containing protein. (533 aa)
	CAEBREN_11609	Uncharacterized protein. (609 aa)
	Cbn-nph-1	CBN-NPH-1 protein. (680 aa)
	Cbn-hlh-8	CBN-HLH-8 protein. (182 aa)
	Cbn-mks-1	CBN-MKS-1 protein. (453 aa)
	Cbn-mrck-1	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1590 aa)
	Cbn-arx-4	Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (301 aa)
	Cbn-inft-1	CBN-INFT-1 protein. (861 aa)
	Cbn-gck-3	CBN-GCK-3 protein. (567 aa)
	CAEBREN_26021	Uncharacterized protein. (801 aa)
	CAEBREN_11722	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family. (356 aa)
	CAEBREN_08672	Peptidase S72 domain-containing protein. (297 aa)
	CAEBREN_17142	Uncharacterized protein. (1101 aa)
	Cbn-toca-1	CBN-TOCA-1 protein. (625 aa)
	CAEBREN_09185	WD_REPEATS_REGION domain-containing protein. (680 aa)
	CAEBREN_05860	Uncharacterized protein. (946 aa)
	Cbn-eps-8	CBN-EPS-8 protein. (919 aa)
	CAEBREN_18371	Uncharacterized protein. (225 aa)
	Cbn-exc-9	CBN-EXC-9 protein. (97 aa)
	Cbn-acl-10	CBN-ACL-10 protein. (392 aa)
	CAEBREN_00131	HMG box domain-containing protein. (308 aa)
	CAEBREN_23998	HMG box domain-containing protein. (429 aa)
	Cbn-erm-1	CBN-ERM-1 protein. (563 aa)
	CAEBREN_02144	Uncharacterized protein. (4902 aa)
	CAEBREN_07808	GATA-type domain-containing protein. (1407 aa)
	CAEBREN_20372	GATA-type domain-containing protein. (241 aa)
	CAEBREN_13328	Uncharacterized protein. (374 aa)
	CAEBREN_21225	Ephrin RBD domain-containing protein; Belongs to the ephrin family. (274 aa)
	CAEBREN_13545	ZP domain-containing protein. (282 aa)
	CAEBREN_12314	HMG box domain-containing protein. (414 aa)
	CAEBREN_29074	HMG box domain-containing protein. (308 aa)
	CAEBREN_29602	FERM domain-containing protein. (516 aa)
	Cbn-wve-1	CBN-WVE-1 protein. (470 aa)
	Cbn-lin-17	CBN-LIN-17 protein; Belongs to the G-protein coupled receptor Fz/Smo family. (557 aa)
	CAEBREN_24147	Uncharacterized protein. (785 aa)
	Cbn-gck-1	CBN-GCK-1 protein. (795 aa)
	Cbn-mig-5	CBN-MIG-5 protein. (687 aa)
	CAEBREN_07368	HMG box domain-containing protein. (989 aa)
	CAEBREN_13162	HMG box domain-containing protein. (435 aa)
	CAEBREN_01871	Uncharacterized protein; Belongs to the actin family. (372 aa)
	CAEBREN_08795	Hexosyltransferase. (726 aa)
	CAEBREN_11082	Uncharacterized protein. (896 aa)
	CAEBREN_17439	LIM zinc-binding domain-containing protein. (91 aa)
	CAEBREN_31061	NAD(P)-bd_dom domain-containing protein. (443 aa)
	Cbn-wsp-1	CBN-WSP-1 protein. (596 aa)
	CAEBREN_01730	Ephrin RBD domain-containing protein; Belongs to the ephrin family. (274 aa)
	CAEBREN_08102	Uncharacterized protein. (1070 aa)
	CAEBREN_30576	WH1 domain-containing protein. (177 aa)
	CAEBREN_10358	GATA-type domain-containing protein. (251 aa)
	CAEBREN_29790	Uncharacterized protein. (583 aa)
	CAEBREN_04942	HMG box domain-containing protein. (262 aa)
	Cbn-sqv-4	UDP-glucose 6-dehydrogenase; Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (481 aa)
	CAEBREN_06624	Uncharacterized protein. (191 aa)
	CAEBREN_28853	Uncharacterized protein. (706 aa)
	CAEBREN_30369	Uncharacterized protein. (766 aa)
	CAEBREN_32113	Fork-head domain-containing protein. (420 aa)
	Cbn-cogc-1	CBN-COGC-1 protein. (297 aa)
	CAEBREN_29494	G_PROTEIN_RECEP_F2_4 domain-containing protein; Belongs to the G-protein coupled receptor Fz/Smo family. (329 aa)
	CAEBREN_31082	G_PROTEIN_RECEP_F2_4 domain-containing protein; Belongs to the G-protein coupled receptor Fz/Smo family. (220 aa)
	CAEBREN_30057	Uncharacterized protein. (71 aa)
	Cbn-efn-4	CBN-EFN-4 protein; Belongs to the ephrin family. (292 aa)
	CAEBREN_08149	Ephrin RBD domain-containing protein; Belongs to the ephrin family. (322 aa)
	CAEBREN_20566	Actin-related protein 2/3 complex subunit 5; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. (152 aa)
	CAEBREN_30307	Uncharacterized protein. (726 aa)
	CAEBREN_14351	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family. (359 aa)
	CAEBREN_15677	Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (183 aa)
	CAEBREN_30434	Uncharacterized protein. (51 aa)
	CAEBREN_28233	Uncharacterized protein. (900 aa)
	Cbn-sem-4	CBN-SEM-4 protein. (694 aa)
	CAEBREN_29697	Uncharacterized protein. (255 aa)
	CAEBREN_31869	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1096 aa)
	CAEBREN_28577	HMG box domain-containing protein. (435 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00131	CAEBREN_02733	G0NH69	G0MER7	HMG box domain-containing protein.	Homeobox domain-containing protein.	0.484
CAEBREN_00131	CAEBREN_07368	G0NH69	G0P0V1	HMG box domain-containing protein.	HMG box domain-containing protein.	0.705
CAEBREN_00131	CAEBREN_10404	G0NH69	G0MFJ9	HMG box domain-containing protein.	Uncharacterized protein.	0.584
CAEBREN_00131	CAEBREN_11082	G0NH69	G0P1T0	HMG box domain-containing protein.	Uncharacterized protein.	0.584
CAEBREN_00131	CAEBREN_13162	G0NH69	G0P0V4	HMG box domain-containing protein.	HMG box domain-containing protein.	0.726
CAEBREN_00131	CAEBREN_28577	G0NH69	G0PKP4	HMG box domain-containing protein.	HMG box domain-containing protein.	0.726
CAEBREN_00131	CAEBREN_30307	G0NH69	G0PFK6	HMG box domain-containing protein.	Uncharacterized protein.	0.505
CAEBREN_00131	Cbn-fozi-1	G0NH69	G0MJY7	HMG box domain-containing protein.	CBN-FOZI-1 protein.	0.439
CAEBREN_00131	Cbn-sem-4	G0NH69	G0PJ51	HMG box domain-containing protein.	CBN-SEM-4 protein.	0.505
CAEBREN_01079	CAEBREN_06624	G0MS08	G0PMX8	GATA-type domain-containing protein.	Uncharacterized protein.	0.417
CAEBREN_01079	CAEBREN_07368	G0MS08	G0P0V1	GATA-type domain-containing protein.	HMG box domain-containing protein.	0.493
CAEBREN_01079	CAEBREN_10404	G0MS08	G0MFJ9	GATA-type domain-containing protein.	Uncharacterized protein.	0.416
CAEBREN_01079	CAEBREN_11082	G0MS08	G0P1T0	GATA-type domain-containing protein.	Uncharacterized protein.	0.416
CAEBREN_01079	CAEBREN_13162	G0MS08	G0P0V4	GATA-type domain-containing protein.	HMG box domain-containing protein.	0.493
CAEBREN_01079	CAEBREN_28577	G0MS08	G0PKP4	GATA-type domain-containing protein.	HMG box domain-containing protein.	0.493
CAEBREN_01079	CAEBREN_32113	G0MS08	G0PC32	GATA-type domain-containing protein.	Fork-head domain-containing protein.	0.467
CAEBREN_01730	CAEBREN_06624	G0P767	G0PMX8	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	Uncharacterized protein.	0.655
CAEBREN_01730	CAEBREN_08102	G0P767	G0P7K4	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	Uncharacterized protein.	0.963
CAEBREN_01730	CAEBREN_17142	G0P767	G0N7B3	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	Uncharacterized protein.	0.963
CAEBREN_01730	CAEBREN_31869	G0P767	G0PKK3	Ephrin RBD domain-containing protein; Belongs to the ephrin family.	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.588

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