(48 nodes) Gland development network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_28154	Uncharacterized protein. (4534 aa)
	CAEBREN_05844	Uncharacterized protein. (250 aa)
	CAEBREN_25733	Uncharacterized protein. (247 aa)
	CAEBREN_00860	CPSase_sm_chain domain-containing protein. (450 aa)
	CAEBREN_02894	BHLH domain-containing protein. (228 aa)
	CAEBREN_14137	Uncharacterized protein. (790 aa)
	CAEBREN_18582	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (234 aa)
	CAEBREN_32012	Uncharacterized protein. (899 aa)
	CAEBREN_23925	Uncharacterized protein. (425 aa)
	CAEBREN_00993	Uncharacterized protein. (675 aa)
	CAEBREN_04250	Uncharacterized protein. (248 aa)
	CAEBREN_21233	EB domain-containing protein. (580 aa)
	CAEBREN_12665	Uncharacterized protein. (355 aa)
	Cbn-phat-6	CBN-PHAT-6 protein. (199 aa)
	Cbn-ceh-28	CBN-CEH-28 protein. (201 aa)
	CAEBREN_24836	ShKT domain-containing protein. (250 aa)
	CAEBREN_21195	RNA helicase. (578 aa)
	CAEBREN_31307	ShKT domain-containing protein. (60 aa)
	Cbn-dod-6	CBN-DOD-6 protein. (60 aa)
	CAEBREN_10077	Sulfhydryl oxidase. (165 aa)
	CAEBREN_21824	Uncharacterized protein. (174 aa)
	CAEBREN_02160	Uncharacterized protein. (349 aa)
	CAEBREN_26043	Uncharacterized protein. (247 aa)
	CAEBREN_10192	Uncharacterized protein. (250 aa)
	CAEBREN_04482	Uncharacterized protein. (247 aa)
	CAEBREN_18116	Uncharacterized protein. (249 aa)
	CAEBREN_30014	Uncharacterized protein. (2201 aa)
	Cbn-hlh-6	CBN-HLH-6 protein. (224 aa)
	Cbn-unc-52	CBN-UNC-52 protein. (3382 aa)
	CAEBREN_06207	Uncharacterized protein. (4169 aa)
	Cbn-tag-293	CBN-TAG-293 protein. (165 aa)
	CAEBREN_10118	Uncharacterized protein. (250 aa)
	Cbn-unc-89	CBN-UNC-89 protein. (2332 aa)
	CAEBREN_11889	Uncharacterized protein. (840 aa)
	CAEBREN_09822	Uncharacterized protein. (222 aa)
	CAEBREN_14927	Uncharacterized protein. (182 aa)
	CAEBREN_13474	Uncharacterized protein. (244 aa)
	CAEBREN_19409	Uncharacterized protein. (295 aa)
	CAEBREN_21602	Uncharacterized protein. (397 aa)
	CAEBREN_31277	Uncharacterized protein. (223 aa)
	CAEBREN_29304	Bile_Hydr_Trans domain-containing protein. (172 aa)
	CAEBREN_31963	BAAT_C domain-containing protein. (223 aa)
	CAEBREN_29205	Homeobox domain-containing protein. (192 aa)
	Cbn-pyr-1	CBN-PYR-1 protein. (2195 aa)
	Cbn-cav-1	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (235 aa)
	CAEBREN_12697	Uncharacterized protein. (297 aa)
	CAEBREN_09053	Uncharacterized protein. (244 aa)
	CAEBREN_20157	Sulfhydryl oxidase. (162 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00860	CAEBREN_11889	G0PFK7	G0NJP6	CPSase_sm_chain domain-containing protein.	Uncharacterized protein.	0.665
CAEBREN_00860	CAEBREN_28154	G0PFK7	G0PEH1	CPSase_sm_chain domain-containing protein.	Uncharacterized protein.	0.665
CAEBREN_00860	CAEBREN_32012	G0PFK7	G0PNW2	CPSase_sm_chain domain-containing protein.	Uncharacterized protein.	0.665
CAEBREN_00860	Cbn-unc-89	G0PFK7	G0NJP5	CPSase_sm_chain domain-containing protein.	CBN-UNC-89 protein.	0.665
CAEBREN_02894	CAEBREN_10118	G0PG14	G0NHM1	BHLH domain-containing protein.	Uncharacterized protein.	0.567
CAEBREN_02894	CAEBREN_12697	G0PG14	G0PC47	BHLH domain-containing protein.	Uncharacterized protein.	0.576
CAEBREN_02894	CAEBREN_19409	G0PG14	G0NUE5	BHLH domain-containing protein.	Uncharacterized protein.	0.576
CAEBREN_02894	CAEBREN_21233	G0PG14	G0MA33	BHLH domain-containing protein.	EB domain-containing protein.	0.580
CAEBREN_02894	CAEBREN_29205	G0PG14	G0P3D5	BHLH domain-containing protein.	Homeobox domain-containing protein.	0.493
CAEBREN_04250	CAEBREN_11889	G0M9Q8	G0NJP6	Uncharacterized protein.	Uncharacterized protein.	0.825
CAEBREN_04250	CAEBREN_12697	G0M9Q8	G0PC47	Uncharacterized protein.	Uncharacterized protein.	0.429
CAEBREN_04250	CAEBREN_19409	G0M9Q8	G0NUE5	Uncharacterized protein.	Uncharacterized protein.	0.429
CAEBREN_04250	CAEBREN_21233	G0M9Q8	G0MA33	Uncharacterized protein.	EB domain-containing protein.	0.495
CAEBREN_04250	CAEBREN_28154	G0M9Q8	G0PEH1	Uncharacterized protein.	Uncharacterized protein.	0.825
CAEBREN_04250	CAEBREN_32012	G0M9Q8	G0PNW2	Uncharacterized protein.	Uncharacterized protein.	0.825
CAEBREN_04250	Cbn-unc-89	G0M9Q8	G0NJP5	Uncharacterized protein.	CBN-UNC-89 protein.	0.825
CAEBREN_04482	CAEBREN_11889	G0MU10	G0NJP6	Uncharacterized protein.	Uncharacterized protein.	0.825
CAEBREN_04482	CAEBREN_12697	G0MU10	G0PC47	Uncharacterized protein.	Uncharacterized protein.	0.456
CAEBREN_04482	CAEBREN_19409	G0MU10	G0NUE5	Uncharacterized protein.	Uncharacterized protein.	0.456
CAEBREN_04482	CAEBREN_21233	G0MU10	G0MA33	Uncharacterized protein.	EB domain-containing protein.	0.495

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