(12 nodes) Regulation of microtubule-based movement network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_31385	Uncharacterized protein. (169 aa)
	CAEBREN_16090	IPPc domain-containing protein. (433 aa)
	CAEBREN_30789	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (805 aa)
	CAEBREN_26405	TPR_REGION domain-containing protein. (471 aa)
	CAEBREN_19002	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (185 aa)
	CAEBREN_29153	Uncharacterized protein. (239 aa)
	CAEBREN_21315	Uncharacterized protein. (145 aa)
	CAEBREN_03320	DUF667 domain-containing protein. (203 aa)
	CAEBREN_19466	IPPc domain-containing protein. (398 aa)
	CAEBREN_05971	TPR_REGION domain-containing protein. (536 aa)
	CAEBREN_28654	Uncharacterized protein. (1450 aa)
	Cbn-syd-2	CBN-SYD-2 protein. (1131 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_03320	CAEBREN_05971	G0N5S0	G0MY08	DUF667 domain-containing protein.	TPR_REGION domain-containing protein.	0.477
CAEBREN_03320	CAEBREN_26405	G0N5S0	G0PL12	DUF667 domain-containing protein.	TPR_REGION domain-containing protein.	0.477
CAEBREN_05971	CAEBREN_03320	G0MY08	G0N5S0	TPR_REGION domain-containing protein.	DUF667 domain-containing protein.	0.477
CAEBREN_05971	CAEBREN_30789	G0MY08	G0PLK0	TPR_REGION domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.474
CAEBREN_16090	CAEBREN_19002	G0P915	G0P4U5	IPPc domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.534
CAEBREN_16090	CAEBREN_19466	G0P915	G0N5E7	IPPc domain-containing protein.	IPPc domain-containing protein.	0.498
CAEBREN_19002	CAEBREN_16090	G0P4U5	G0P915	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	IPPc domain-containing protein.	0.534
CAEBREN_19002	CAEBREN_19466	G0P4U5	G0N5E7	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	IPPc domain-containing protein.	0.565
CAEBREN_19002	CAEBREN_29153	G0P4U5	G0NAV5	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.654
CAEBREN_19002	CAEBREN_30789	G0P4U5	G0PLK0	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.889
CAEBREN_19002	CAEBREN_31385	G0P4U5	G0PJX7	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.654
CAEBREN_19002	Cbn-syd-2	G0P4U5	G0MI89	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	CBN-SYD-2 protein.	0.705
CAEBREN_19466	CAEBREN_16090	G0N5E7	G0P915	IPPc domain-containing protein.	IPPc domain-containing protein.	0.498
CAEBREN_19466	CAEBREN_19002	G0N5E7	G0P4U5	IPPc domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.565
CAEBREN_26405	CAEBREN_03320	G0PL12	G0N5S0	TPR_REGION domain-containing protein.	DUF667 domain-containing protein.	0.477
CAEBREN_26405	CAEBREN_30789	G0PL12	G0PLK0	TPR_REGION domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.474
CAEBREN_29153	CAEBREN_19002	G0NAV5	G0P4U5	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.654
CAEBREN_30789	CAEBREN_05971	G0PLK0	G0MY08	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	TPR_REGION domain-containing protein.	0.474
CAEBREN_30789	CAEBREN_19002	G0PLK0	G0P4U5	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.889
CAEBREN_30789	CAEBREN_26405	G0PLK0	G0PL12	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	TPR_REGION domain-containing protein.	0.474

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About