(64 nodes) Cullin family protein binding network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_12066	Uncharacterized protein; Belongs to the SKP1 family. (203 aa)
	CAEBREN_19269	Uncharacterized protein; Belongs to the SKP1 family. (181 aa)
	CAEBREN_06748	RING-type domain-containing protein. (110 aa)
	CAEBREN_32642	Uncharacterized protein; Belongs to the SKP1 family. (518 aa)
	CAEBREN_00705	Uncharacterized protein; Belongs to the SKP1 family. (179 aa)
	CAEBREN_07917	Uncharacterized protein; Belongs to the SKP1 family. (212 aa)
	CAEBREN_24891	Uncharacterized protein; Belongs to the SKP1 family. (182 aa)
	CAEBREN_24246	Skp1 domain-containing protein. (109 aa)
	CAEBREN_03973	Uncharacterized protein; Belongs to the SKP1 family. (171 aa)
	Cbn-mel-26	CBN-MEL-26 protein. (358 aa)
	CAEBREN_06862	Uncharacterized protein; Belongs to the SKP1 family. (182 aa)
	CAEBREN_15469	Uncharacterized protein; Belongs to the SKP1 family. (189 aa)
	CAEBREN_20945	Uncharacterized protein; Belongs to the SKP1 family. (215 aa)
	CAEBREN_02780	Uncharacterized protein. (146 aa)
	CAEBREN_18145	Uncharacterized protein; Belongs to the SKP1 family. (213 aa)
	CAEBREN_19547	Uncharacterized protein; Belongs to the SKP1 family. (217 aa)
	CAEBREN_06864	Uncharacterized protein; Belongs to the SKP1 family. (213 aa)
	Cbn-skr-16	CBN-SKR-16 protein; Belongs to the SKP1 family. (181 aa)
	CAEBREN_09546	Uncharacterized protein; Belongs to the SKP1 family. (179 aa)
	CAEBREN_06305	Uncharacterized protein; Belongs to the SKP1 family. (217 aa)
	CAEBREN_05003	Uncharacterized protein; Belongs to the SKP1 family. (195 aa)
	CAEBREN_13630	Uncharacterized protein; Belongs to the SKP1 family. (176 aa)
	CAEBREN_15258	Uncharacterized protein. (394 aa)
	CAEBREN_19551	Uncharacterized protein; Belongs to the SKP1 family. (213 aa)
	CAEBREN_12700	Uncharacterized protein; Belongs to the SKP1 family. (213 aa)
	CAEBREN_07406	Uncharacterized protein; Belongs to the SKP1 family. (215 aa)
	CAEBREN_09491	Uncharacterized protein; Belongs to the SKP1 family. (213 aa)
	CAEBREN_20660	Uncharacterized protein; Belongs to the SKP1 family. (254 aa)
	CAEBREN_01294	Uncharacterized protein; Belongs to the SKP1 family. (290 aa)
	CAEBREN_01965	Uncharacterized protein; Belongs to the SKP1 family. (213 aa)
	CAEBREN_20393	Uncharacterized protein; Belongs to the SKP1 family. (196 aa)
	CAEBREN_09886	Uncharacterized protein; Belongs to the SKP1 family. (207 aa)
	CAEBREN_17847	Uncharacterized protein; Belongs to the SKP1 family. (207 aa)
	CAEBREN_25571	Uncharacterized protein; Belongs to the SKP1 family. (209 aa)
	CAEBREN_05052	Uncharacterized protein; Belongs to the SKP1 family. (178 aa)
	CAEBREN_17210	Uncharacterized protein; Belongs to the SKP1 family. (207 aa)
	CAEBREN_06894	Uncharacterized protein; Belongs to the SKP1 family. (212 aa)
	CAEBREN_03080	Uncharacterized protein; Belongs to the SKP1 family. (201 aa)
	CAEBREN_11061	Uncharacterized protein; Belongs to the SKP1 family. (191 aa)
	CAEBREN_14798	Uncharacterized protein; Belongs to the SKP1 family. (163 aa)
	CAEBREN_21639	Uncharacterized protein; Belongs to the SKP1 family. (182 aa)
	CAEBREN_06348	Uncharacterized protein; Belongs to the SKP1 family. (163 aa)
	CAEBREN_07947	Uncharacterized protein; Belongs to the SKP1 family. (226 aa)
	CAEBREN_29818	BTB_2 domain-containing protein. (176 aa)
	CAEBREN_09622	Uncharacterized protein; Belongs to the SKP1 family. (169 aa)
	CAEBREN_19195	Uncharacterized protein; Belongs to the SKP1 family. (213 aa)
	CAEBREN_03887	Uncharacterized protein; Belongs to the SKP1 family. (171 aa)
	CAEBREN_10018	Uncharacterized protein; Belongs to the SKP1 family. (217 aa)
	CAEBREN_11080	Uncharacterized protein; Belongs to the SKP1 family. (192 aa)
	CAEBREN_15546	Uncharacterized protein; Belongs to the SKP1 family. (200 aa)
	CAEBREN_20927	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (185 aa)
	CAEBREN_21719	Uncharacterized protein; Belongs to the SKP1 family. (189 aa)
	CAEBREN_07864	MADF domain-containing protein. (426 aa)
	CAEBREN_03931	Skp1 domain-containing protein. (123 aa)
	CAEBREN_07357	GATA-type domain-containing protein; Belongs to the SKP1 family. (195 aa)
	CAEBREN_21224	GATA-type domain-containing protein; Belongs to the SKP1 family. (202 aa)
	CAEBREN_25084	Uncharacterized protein; Belongs to the SKP1 family. (217 aa)
	Cbn-apc-11	CBN-APC-11 protein. (139 aa)
	Cbn-dcn-1	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. (293 aa)
	Cbn-skr-20	CBN-SKR-20 protein; Belongs to the SKP1 family. (173 aa)
	Cbn-skr-19	CBN-SKR-19 protein; Belongs to the SKP1 family. (162 aa)
	Cbn-skr-21	CBN-SKR-21 protein; Belongs to the SKP1 family. (170 aa)
	CAEBREN_09334	Uncharacterized protein. (519 aa)
	CAEBREN_23103	BTB_2 domain-containing protein. (146 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00705	CAEBREN_06748	G0PK09	G0PK64	Uncharacterized protein; Belongs to the SKP1 family.	RING-type domain-containing protein.	0.926
CAEBREN_00705	CAEBREN_09334	G0PK09	G0M8B2	Uncharacterized protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.610
CAEBREN_00705	Cbn-dcn-1	G0PK09	G0ME26	Uncharacterized protein; Belongs to the SKP1 family.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.547
CAEBREN_01294	CAEBREN_06748	G0NLZ1	G0PK64	Uncharacterized protein; Belongs to the SKP1 family.	RING-type domain-containing protein.	0.855
CAEBREN_01294	CAEBREN_09334	G0NLZ1	G0M8B2	Uncharacterized protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.610
CAEBREN_01294	Cbn-dcn-1	G0NLZ1	G0ME26	Uncharacterized protein; Belongs to the SKP1 family.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.547
CAEBREN_01965	CAEBREN_06748	G0NLC4	G0PK64	Uncharacterized protein; Belongs to the SKP1 family.	RING-type domain-containing protein.	0.855
CAEBREN_01965	CAEBREN_09334	G0NLC4	G0M8B2	Uncharacterized protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.610
CAEBREN_01965	Cbn-dcn-1	G0NLC4	G0ME26	Uncharacterized protein; Belongs to the SKP1 family.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.547
CAEBREN_02780	CAEBREN_06748	G0P637	G0PK64	Uncharacterized protein.	RING-type domain-containing protein.	0.844
CAEBREN_02780	CAEBREN_09334	G0P637	G0M8B2	Uncharacterized protein.	Uncharacterized protein.	0.610
CAEBREN_02780	Cbn-dcn-1	G0P637	G0ME26	Uncharacterized protein.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.535
CAEBREN_03080	CAEBREN_06748	G0NL14	G0PK64	Uncharacterized protein; Belongs to the SKP1 family.	RING-type domain-containing protein.	0.855
CAEBREN_03080	CAEBREN_09334	G0NL14	G0M8B2	Uncharacterized protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.610
CAEBREN_03080	Cbn-dcn-1	G0NL14	G0ME26	Uncharacterized protein; Belongs to the SKP1 family.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.547
CAEBREN_03887	CAEBREN_06748	G0MZ26	G0PK64	Uncharacterized protein; Belongs to the SKP1 family.	RING-type domain-containing protein.	0.855
CAEBREN_03887	CAEBREN_09334	G0MZ26	G0M8B2	Uncharacterized protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.610
CAEBREN_03887	Cbn-dcn-1	G0MZ26	G0ME26	Uncharacterized protein; Belongs to the SKP1 family.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.547
CAEBREN_03931	CAEBREN_06748	G0MNM8	G0PK64	Skp1 domain-containing protein.	RING-type domain-containing protein.	0.855
CAEBREN_03931	CAEBREN_09334	G0MNM8	G0M8B2	Skp1 domain-containing protein.	Uncharacterized protein.	0.610

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