(27 nodes) Endocytic vesicle membrane network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_24940	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (813 aa)
	CAEBREN_29162	Uncharacterized protein. (183 aa)
	CAEBREN_30938	Uncharacterized protein. (101 aa)
	CAEBREN_18349	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (787 aa)
	CAEBREN_05468	Adaptin_N domain-containing protein. (96 aa)
	CAEBREN_01748	Uncharacterized protein. (330 aa)
	CAEBREN_28538	Coronin; Belongs to the WD repeat coronin family. (636 aa)
	Cbn-apa-2	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (923 aa)
	CAEBREN_28844	Uncharacterized protein. (491 aa)
	CAEBREN_24861	Uncharacterized protein. (431 aa)
	Cbn-dyn-1	CBN-DYN-1 protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (837 aa)
	CAEBREN_23854	Adaptin_N domain-containing protein. (136 aa)
	CAEBREN_07821	Adaptin_N domain-containing protein. (332 aa)
	Cbn-lst-4	CBN-LST-4 protein. (754 aa)
	Cbn-ocrl-1	CBN-OCRL-1 protein. (712 aa)
	CAEBREN_08840	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (179 aa)
	CAEBREN_25336	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (813 aa)
	CAEBREN_13353	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (144 aa)
	CAEBREN_22418	Adaptin_N domain-containing protein. (554 aa)
	CAEBREN_13036	Adaptin_N domain-containing protein. (589 aa)
	CAEBREN_06541	Uncharacterized protein. (468 aa)
	CAEBREN_26110	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (815 aa)
	CAEBREN_16317	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (224 aa)
	CAEBREN_20348	SPK domain-containing protein. (298 aa)
	CAEBREN_25889	Uncharacterized protein. (544 aa)
	CAEBREN_18471	Uncharacterized protein. (1108 aa)
	Cbn-aps-2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_05468	CAEBREN_08840	G0PLG6	G0P318	Adaptin_N domain-containing protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_05468	CAEBREN_13353	G0PLG6	G0NE75	Adaptin_N domain-containing protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_05468	CAEBREN_16317	G0PLG6	G0PHT9	Adaptin_N domain-containing protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_05468	CAEBREN_18349	G0PLG6	G0PKU0	Adaptin_N domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_05468	CAEBREN_24940	G0PLG6	G0PKH2	Adaptin_N domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_05468	CAEBREN_25336	G0PLG6	G0NQG8	Adaptin_N domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_05468	CAEBREN_26110	G0PLG6	G0NCG2	Adaptin_N domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_05468	CAEBREN_28844	G0PLG6	G0MFA3	Adaptin_N domain-containing protein.	Uncharacterized protein.	0.615
CAEBREN_05468	Cbn-aps-2	G0PLG6	G0M841	Adaptin_N domain-containing protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.989
CAEBREN_05468	Cbn-dyn-1	G0PLG6	G0MAU6	Adaptin_N domain-containing protein.	CBN-DYN-1 protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_05468	Cbn-lst-4	G0PLG6	G0P9M7	Adaptin_N domain-containing protein.	CBN-LST-4 protein.	0.710
CAEBREN_05468	Cbn-ocrl-1	G0PLG6	G0P7R8	Adaptin_N domain-containing protein.	CBN-OCRL-1 protein.	0.615
CAEBREN_06541	CAEBREN_08840	G0ND65	G0P318	Uncharacterized protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_06541	CAEBREN_13353	G0ND65	G0NE75	Uncharacterized protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_06541	CAEBREN_16317	G0ND65	G0PHT9	Uncharacterized protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_06541	CAEBREN_18349	G0ND65	G0PKU0	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_06541	CAEBREN_24940	G0ND65	G0PKH2	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_06541	CAEBREN_25336	G0ND65	G0NQG8	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639
CAEBREN_06541	CAEBREN_25889	G0ND65	G0NBB6	Uncharacterized protein.	Uncharacterized protein.	0.905
CAEBREN_06541	CAEBREN_26110	G0ND65	G0NCG2	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.639

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