(25 nodes) Cortical actin cytoskeleton network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_08737	PH domain-containing protein. (993 aa)
	Cbn-ani-3	CBN-ANI-3 protein. (777 aa)
	CAEBREN_09601	Uncharacterized protein. (2251 aa)
	CAEBREN_31493	PH domain-containing protein. (1145 aa)
	CAEBREN_13309	GLTSCR1 domain-containing protein. (1692 aa)
	CAEBREN_25403	WD_REPEATS_REGION domain-containing protein. (201 aa)
	Cbn-wsp-1	CBN-WSP-1 protein. (596 aa)
	CAEBREN_30576	WH1 domain-containing protein. (177 aa)
	CAEBREN_30369	Uncharacterized protein. (766 aa)
	CAEBREN_11897	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (598 aa)
	CAEBREN_21448	PH domain-containing protein. (993 aa)
	CAEBREN_29365	Uncharacterized protein. (388 aa)
	CAEBREN_20251	PH domain-containing protein. (651 aa)
	Cbn-tag-216	CBN-TAG-216 protein. (602 aa)
	CAEBREN_07293	Spectrin beta chain; Belongs to the spectrin family. (2285 aa)
	CAEBREN_16938	Uncharacterized protein. (192 aa)
	CAEBREN_21624	Uncharacterized protein. (267 aa)
	CAEBREN_22555	Uncharacterized protein. (196 aa)
	CAEBREN_28712	Uncharacterized protein. (406 aa)
	Cbn-act-5	CBN-ACT-5 protein. (375 aa)
	Cbn-pfn-1	Profilin; Belongs to the profilin family. (132 aa)
	CAEBREN_06770	PH domain-containing protein. (470 aa)
	CAEBREN_23287	PH domain-containing protein. (1748 aa)
	Cbn-unc-78	CBN-UNC-78 protein. (611 aa)
	Cbn-spc-1	CBN-SPC-1 protein. (2427 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_06770	CAEBREN_08737	G0MGX8	G0MZL7	PH domain-containing protein.	PH domain-containing protein.	0.605
CAEBREN_06770	CAEBREN_16938	G0MGX8	G0MR45	PH domain-containing protein.	Uncharacterized protein.	0.884
CAEBREN_06770	CAEBREN_21448	G0MGX8	G0PE52	PH domain-containing protein.	PH domain-containing protein.	0.605
CAEBREN_06770	CAEBREN_21624	G0MGX8	G0MR40	PH domain-containing protein.	Uncharacterized protein.	0.884
CAEBREN_06770	CAEBREN_22555	G0MGX8	G0MR36	PH domain-containing protein.	Uncharacterized protein.	0.884
CAEBREN_06770	CAEBREN_23287	G0MGX8	G0MGM5	PH domain-containing protein.	PH domain-containing protein.	0.605
CAEBREN_06770	CAEBREN_29365	G0MGX8	G0PIF2	PH domain-containing protein.	Uncharacterized protein.	0.605
CAEBREN_06770	CAEBREN_31493	G0MGX8	G0N600	PH domain-containing protein.	PH domain-containing protein.	0.605
CAEBREN_06770	Cbn-ani-3	G0MGX8	G0N0V3	PH domain-containing protein.	CBN-ANI-3 protein.	0.605
CAEBREN_07293	CAEBREN_09601	G0MY27	G0N5F3	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.943
CAEBREN_07293	CAEBREN_16938	G0MY27	G0MR45	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.611
CAEBREN_07293	CAEBREN_21624	G0MY27	G0MR40	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.611
CAEBREN_07293	CAEBREN_22555	G0MY27	G0MR36	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.609
CAEBREN_07293	Cbn-act-5	G0MY27	G0ML58	Spectrin beta chain; Belongs to the spectrin family.	CBN-ACT-5 protein.	0.648
CAEBREN_07293	Cbn-spc-1	G0MY27	G0M7G2	Spectrin beta chain; Belongs to the spectrin family.	CBN-SPC-1 protein.	0.943
CAEBREN_08737	CAEBREN_06770	G0MZL7	G0MGX8	PH domain-containing protein.	PH domain-containing protein.	0.605
CAEBREN_08737	CAEBREN_16938	G0MZL7	G0MR45	PH domain-containing protein.	Uncharacterized protein.	0.852
CAEBREN_08737	CAEBREN_21624	G0MZL7	G0MR40	PH domain-containing protein.	Uncharacterized protein.	0.852
CAEBREN_08737	CAEBREN_22555	G0MZL7	G0MR36	PH domain-containing protein.	Uncharacterized protein.	0.852
CAEBREN_08737	Cbn-act-5	G0MZL7	G0ML58	PH domain-containing protein.	CBN-ACT-5 protein.	0.716

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