(28 nodes) Intraciliary transport particle network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-daf-10	CBN-DAF-10 protein. (1239 aa)
	CAEBREN_12938	Uncharacterized protein. (1064 aa)
	CAEBREN_28014	Uncharacterized protein. (1044 aa)
	CAEBREN_14348	VWFA domain-containing protein. (372 aa)
	CAEBREN_16930	Uncharacterized protein. (626 aa)
	CAEBREN_15336	ANAPC4_WD40 domain-containing protein. (660 aa)
	Cbn-che-13	CBN-CHE-13 protein. (253 aa)
	CAEBREN_17752	Uncharacterized protein. (72 aa)
	CAEBREN_06971	Uncharacterized protein. (278 aa)
	CAEBREN_29520	Uncharacterized protein. (463 aa)
	CAEBREN_07258	Uncharacterized protein. (953 aa)
	CAEBREN_16460	Uncharacterized protein. (129 aa)
	Cbn-ift-81	CBN-IFT-81 protein. (654 aa)
	Cbn-ifta-1	CBN-IFTA-1 protein. (1074 aa)
	CAEBREN_07292	Uncharacterized protein. (129 aa)
	CAEBREN_13813	Uncharacterized protein. (1738 aa)
	CAEBREN_28865	Uncharacterized protein. (1235 aa)
	CAEBREN_15180	Uncharacterized protein. (514 aa)
	Cbn-dyf-2	CBN-DYF-2 protein. (681 aa)
	CAEBREN_04184	Uncharacterized protein. (1313 aa)
	CAEBREN_28654	Uncharacterized protein. (1450 aa)
	CAEBREN_32658	Uncharacterized protein. (385 aa)
	CAEBREN_14741	Uncharacterized protein. (1038 aa)
	Cbn-che-2	CBN-CHE-2 protein. (761 aa)
	Cbn-dyf-11	CBN-DYF-11 protein. (551 aa)
	CAEBREN_19361	Uncharacterized protein. (189 aa)
	Cbn-osm-6	CBN-OSM-6 protein. (471 aa)
	CAEBREN_08468	ANAPC4_WD40 domain-containing protein. (523 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_04184	CAEBREN_06971	G0MLI3	G0PJC4	Uncharacterized protein.	Uncharacterized protein.	0.787
CAEBREN_04184	CAEBREN_07258	G0MLI3	G0P892	Uncharacterized protein.	Uncharacterized protein.	0.965
CAEBREN_04184	CAEBREN_07292	G0MLI3	G0MF46	Uncharacterized protein.	Uncharacterized protein.	0.930
CAEBREN_04184	CAEBREN_08468	G0MLI3	G0NPA7	Uncharacterized protein.	ANAPC4_WD40 domain-containing protein.	0.967
CAEBREN_04184	CAEBREN_12938	G0MLI3	G0NQD5	Uncharacterized protein.	Uncharacterized protein.	0.980
CAEBREN_04184	CAEBREN_13813	G0MLI3	G0MHI3	Uncharacterized protein.	Uncharacterized protein.	0.868
CAEBREN_04184	CAEBREN_14348	G0MLI3	G0NR18	Uncharacterized protein.	VWFA domain-containing protein.	0.856
CAEBREN_04184	CAEBREN_14741	G0MLI3	G0N4X9	Uncharacterized protein.	Uncharacterized protein.	0.961
CAEBREN_04184	CAEBREN_15180	G0MLI3	G0ML33	Uncharacterized protein.	Uncharacterized protein.	0.976
CAEBREN_04184	CAEBREN_15336	G0MLI3	G0NSP0	Uncharacterized protein.	ANAPC4_WD40 domain-containing protein.	0.968
CAEBREN_04184	CAEBREN_16460	G0MLI3	G0P8J5	Uncharacterized protein.	Uncharacterized protein.	0.930
CAEBREN_04184	CAEBREN_16930	G0MLI3	G0NR21	Uncharacterized protein.	Uncharacterized protein.	0.997
CAEBREN_04184	CAEBREN_28014	G0MLI3	G0NQD6	Uncharacterized protein.	Uncharacterized protein.	0.981
CAEBREN_04184	CAEBREN_28654	G0MLI3	G0MPB8	Uncharacterized protein.	Uncharacterized protein.	0.997
CAEBREN_04184	CAEBREN_28865	G0MLI3	G0MIN3	Uncharacterized protein.	Uncharacterized protein.	0.962
CAEBREN_04184	CAEBREN_29520	G0MLI3	G0PJ72	Uncharacterized protein.	Uncharacterized protein.	0.838
CAEBREN_04184	CAEBREN_32658	G0MLI3	G0N282	Uncharacterized protein.	Uncharacterized protein.	0.836
CAEBREN_04184	Cbn-che-13	G0MLI3	G0NY00	Uncharacterized protein.	CBN-CHE-13 protein.	0.784
CAEBREN_04184	Cbn-che-2	G0MLI3	G0N7H4	Uncharacterized protein.	CBN-CHE-2 protein.	0.924
CAEBREN_04184	Cbn-daf-10	G0MLI3	G0NQD4	Uncharacterized protein.	CBN-DAF-10 protein.	0.981

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