(12 nodes) Terminal bouton network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_20013	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family. (1243 aa)
	CAEBREN_02463	Uncharacterized protein. (1668 aa)
	CAEBREN_22078	SSD domain-containing protein. (984 aa)
	Cbn-hen-1	CBN-HEN-1 protein. (113 aa)
	CAEBREN_11449	Uncharacterized protein. (261 aa)
	CAEBREN_12911	Uncharacterized protein. (143 aa)
	Cbn-cpx-2	CBN-CPX-2 protein. (145 aa)
	Cbn-dnj-14	CBN-DNJ-14 protein. (236 aa)
	Cbn-cat-1	CBN-CAT-1 protein. (551 aa)
	CAEBREN_29867	Uncharacterized protein. (340 aa)
	CAEBREN_20885	Adaptin_N domain-containing protein. (1223 aa)
	CAEBREN_17280	Uncharacterized protein. (1646 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_02463	CAEBREN_12911	G0NCU2	G0MNR9	Uncharacterized protein.	Uncharacterized protein.	0.738
CAEBREN_02463	Cbn-cat-1	G0NCU2	G0M6I7	Uncharacterized protein.	CBN-CAT-1 protein.	0.695
CAEBREN_02463	Cbn-cpx-2	G0NCU2	G0MBN0	Uncharacterized protein.	CBN-CPX-2 protein.	0.738
CAEBREN_12911	CAEBREN_02463	G0MNR9	G0NCU2	Uncharacterized protein.	Uncharacterized protein.	0.738
CAEBREN_12911	CAEBREN_17280	G0MNR9	G0P109	Uncharacterized protein.	Uncharacterized protein.	0.738
CAEBREN_12911	CAEBREN_29867	G0MNR9	G0PH14	Uncharacterized protein.	Uncharacterized protein.	0.738
CAEBREN_12911	Cbn-cat-1	G0MNR9	G0M6I7	Uncharacterized protein.	CBN-CAT-1 protein.	0.612
CAEBREN_12911	Cbn-dnj-14	G0MNR9	G0M891	Uncharacterized protein.	CBN-DNJ-14 protein.	0.743
CAEBREN_17280	CAEBREN_12911	G0P109	G0MNR9	Uncharacterized protein.	Uncharacterized protein.	0.738
CAEBREN_17280	Cbn-cat-1	G0P109	G0M6I7	Uncharacterized protein.	CBN-CAT-1 protein.	0.695
CAEBREN_17280	Cbn-cpx-2	G0P109	G0MBN0	Uncharacterized protein.	CBN-CPX-2 protein.	0.738
CAEBREN_20013	Cbn-cat-1	G0NQN6	G0M6I7	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	CBN-CAT-1 protein.	0.555
CAEBREN_20885	Cbn-cat-1	G0PAC7	G0M6I7	Adaptin_N domain-containing protein.	CBN-CAT-1 protein.	0.555
CAEBREN_29867	CAEBREN_12911	G0PH14	G0MNR9	Uncharacterized protein.	Uncharacterized protein.	0.738
CAEBREN_29867	Cbn-cat-1	G0PH14	G0M6I7	Uncharacterized protein.	CBN-CAT-1 protein.	0.695
CAEBREN_29867	Cbn-cpx-2	G0PH14	G0MBN0	Uncharacterized protein.	CBN-CPX-2 protein.	0.738
Cbn-cat-1	CAEBREN_02463	G0M6I7	G0NCU2	CBN-CAT-1 protein.	Uncharacterized protein.	0.695
Cbn-cat-1	CAEBREN_12911	G0M6I7	G0MNR9	CBN-CAT-1 protein.	Uncharacterized protein.	0.612
Cbn-cat-1	CAEBREN_17280	G0M6I7	G0P109	CBN-CAT-1 protein.	Uncharacterized protein.	0.695
Cbn-cat-1	CAEBREN_20013	G0M6I7	G0NQN6	CBN-CAT-1 protein.	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	0.555

page 1 of 2

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

Experiments

Fusion

© STRING Consortium 2025

Credits

Access

Info

About