(11 nodes) BORC complex network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_05568	KxDL domain-containing protein. (140 aa)
	CAEBREN_25838	Uncharacterized protein. (122 aa)
	CAEBREN_03084	Uncharacterized protein. (122 aa)
	CAEBREN_00978	KxDL domain-containing protein. (130 aa)
	CAEBREN_31385	Uncharacterized protein. (169 aa)
	CAEBREN_24675	Uncharacterized protein. (74 aa)
	CAEBREN_01523	Uncharacterized protein. (153 aa)
	CAEBREN_29153	Uncharacterized protein. (239 aa)
	CAEBREN_20854	Uncharacterized protein. (126 aa)
	CAEBREN_16947	Uncharacterized protein. (170 aa)
	CAEBREN_02481	Uncharacterized protein. (166 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00978	CAEBREN_01523	G0PIW5	G0NCE2	KxDL domain-containing protein.	Uncharacterized protein.	0.688
CAEBREN_00978	CAEBREN_02481	G0PIW5	G0NRY6	KxDL domain-containing protein.	Uncharacterized protein.	0.852
CAEBREN_00978	CAEBREN_03084	G0PIW5	G0PCM3	KxDL domain-containing protein.	Uncharacterized protein.	0.631
CAEBREN_00978	CAEBREN_16947	G0PIW5	G0NLX1	KxDL domain-containing protein.	Uncharacterized protein.	0.852
CAEBREN_00978	CAEBREN_20854	G0PIW5	G0MAW7	KxDL domain-containing protein.	Uncharacterized protein.	0.606
CAEBREN_00978	CAEBREN_24675	G0PIW5	G0NCF9	KxDL domain-containing protein.	Uncharacterized protein.	0.688
CAEBREN_00978	CAEBREN_25838	G0PIW5	G0NYP1	KxDL domain-containing protein.	Uncharacterized protein.	0.631
CAEBREN_00978	CAEBREN_29153	G0PIW5	G0NAV5	KxDL domain-containing protein.	Uncharacterized protein.	0.509
CAEBREN_00978	CAEBREN_31385	G0PIW5	G0PJX7	KxDL domain-containing protein.	Uncharacterized protein.	0.509
CAEBREN_01523	CAEBREN_00978	G0NCE2	G0PIW5	Uncharacterized protein.	KxDL domain-containing protein.	0.688
CAEBREN_01523	CAEBREN_02481	G0NCE2	G0NRY6	Uncharacterized protein.	Uncharacterized protein.	0.759
CAEBREN_01523	CAEBREN_03084	G0NCE2	G0PCM3	Uncharacterized protein.	Uncharacterized protein.	0.631
CAEBREN_01523	CAEBREN_05568	G0NCE2	G0NX92	Uncharacterized protein.	KxDL domain-containing protein.	0.688
CAEBREN_01523	CAEBREN_16947	G0NCE2	G0NLX1	Uncharacterized protein.	Uncharacterized protein.	0.759
CAEBREN_01523	CAEBREN_20854	G0NCE2	G0MAW7	Uncharacterized protein.	Uncharacterized protein.	0.702
CAEBREN_01523	CAEBREN_25838	G0NCE2	G0NYP1	Uncharacterized protein.	Uncharacterized protein.	0.631
CAEBREN_01523	CAEBREN_29153	G0NCE2	G0NAV5	Uncharacterized protein.	Uncharacterized protein.	0.664
CAEBREN_01523	CAEBREN_31385	G0NCE2	G0PJX7	Uncharacterized protein.	Uncharacterized protein.	0.664
CAEBREN_02481	CAEBREN_00978	G0NRY6	G0PIW5	Uncharacterized protein.	KxDL domain-containing protein.	0.852
CAEBREN_02481	CAEBREN_01523	G0NRY6	G0NCE2	Uncharacterized protein.	Uncharacterized protein.	0.759

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