(83 nodes) Cytoplasmic region network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_09978	Uncharacterized protein. (266 aa)
	CAEBREN_30316	SH2 domain-containing protein. (304 aa)
	CAEBREN_32224	Uncharacterized protein. (218 aa)
	CAEBREN_18284	Uncharacterized protein. (123 aa)
	Cbn-ifta-2	CBN-IFTA-2 protein. (232 aa)
	CAEBREN_19665	Uncharacterized protein. (276 aa)
	CAEBREN_21071	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (315 aa)
	Cbn-clic-1	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (223 aa)
	CAEBREN_00726	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (646 aa)
	CAEBREN_04322	Uncharacterized protein. (62 aa)
	Cbn-par-2	CBN-PAR-2 protein. (719 aa)
	CAEBREN_16168	Doublecortin domain-containing protein. (464 aa)
	CAEBREN_21005	Uncharacterized protein. (855 aa)
	CAEBREN_07435	Uncharacterized protein. (190 aa)
	CAEBREN_12522	Uncharacterized protein. (161 aa)
	Cbn-dyf-11	CBN-DYF-11 protein. (551 aa)
	CAEBREN_04702	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (466 aa)
	Cbn-unc-10	CBN-UNC-10 protein. (1638 aa)
	Cbn-let-767	CBN-LET-767 protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (316 aa)
	CAEBREN_14476	Uncharacterized protein. (838 aa)
	Cbn-ani-3	CBN-ANI-3 protein. (777 aa)
	CAEBREN_31951	PID domain-containing protein. (611 aa)
	CAEBREN_02463	Uncharacterized protein. (1668 aa)
	CAEBREN_25332	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (170 aa)
	CAEBREN_30856	Uncharacterized protein. (283 aa)
	CAEBREN_30617	Uncharacterized protein. (257 aa)
	CAEBREN_06971	Uncharacterized protein. (278 aa)
	CAEBREN_31375	DH domain-containing protein. (489 aa)
	CAEBREN_29399	TPR_REGION domain-containing protein. (662 aa)
	CAEBREN_29867	Uncharacterized protein. (340 aa)
	Cbn-shc-2	CBN-SHC-2 protein. (648 aa)
	Cbn-klp-11	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (320 aa)
	CAEBREN_28864	Doublecortin domain-containing protein. (464 aa)
	CAEBREN_09202	Uncharacterized protein. (248 aa)
	CAEBREN_24145	Uncharacterized protein. (169 aa)
	CAEBREN_07160	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (315 aa)
	Cbn-nsy-1	CBN-NSY-1 protein. (1501 aa)
	CAEBREN_32039	Myotubularin phosphatase domain-containing protein. (97 aa)
	Cbn-spd-5	CBN-SPD-5 protein. (1214 aa)
	CAEBREN_09570	Uncharacterized protein. (534 aa)
	CAEBREN_09798	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (874 aa)
	CAEBREN_21834	Uncharacterized protein. (1411 aa)
	CAEBREN_17280	Uncharacterized protein. (1646 aa)
	CAEBREN_14013	Uncharacterized protein. (259 aa)
	CAEBREN_08681	Uncharacterized protein. (534 aa)
	Cbn-che-13	CBN-CHE-13 protein. (253 aa)
	CAEBREN_32059	TPR_REGION domain-containing protein. (680 aa)
	CAEBREN_16930	Uncharacterized protein. (626 aa)
	CAEBREN_15636	Uncharacterized protein. (65 aa)
	Cbn-flp-1	CBN-FLP-1 protein. (136 aa)
	CAEBREN_31142	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (447 aa)
	CAEBREN_28053	Tubulin_C domain-containing protein. (268 aa)
	Cbn-ttll-9	CBN-TTLL-9 protein. (289 aa)
	CAEBREN_05905	Uncharacterized protein. (1299 aa)
	Cbn-rab-3	CBN-RAB-3 protein. (219 aa)
	CAEBREN_07829	Uncharacterized protein. (294 aa)
	Cbn-insc-1	CBN-INSC-1 protein. (717 aa)
	CAEBREN_02994	Uncharacterized protein. (478 aa)
	CAEBREN_20906	Uncharacterized protein. (297 aa)
	CAEBREN_22321	Uncharacterized protein. (173 aa)
	CAEBREN_02749	Uncharacterized protein. (143 aa)
	CAEBREN_28411	Uncharacterized protein. (650 aa)
	CAEBREN_21367	Uncharacterized protein. (429 aa)
	Cbn-tir-1	CBN-TIR-1 protein. (967 aa)
	Cbn-tiar-2	CBN-TIAR-2 protein. (420 aa)
	Cbn-unc-116	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (849 aa)
	CAEBREN_25639	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (190 aa)
	Cbn-mtm-1	CBN-MTM-1 protein. (571 aa)
	CAEBREN_07378	Uncharacterized protein. (1212 aa)
	Cbn-cls-1	CBN-CLS-1 protein. (1365 aa)
	CAEBREN_03813	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (444 aa)
	CAEBREN_13813	Uncharacterized protein. (1738 aa)
	CAEBREN_08579	Uncharacterized protein. (422 aa)
	CAEBREN_15100	WW domain-containing protein. (430 aa)
	Cbn-abl-1	Tyrosine-protein kinase. (1261 aa)
	Cbn-syd-2	CBN-SYD-2 protein. (1131 aa)
	Cbn-cls-3	CBN-CLS-3 protein. (920 aa)
	Cbn-cls-2	CBN-CLS-2 protein. (1021 aa)
	CAEBREN_02902	Uncharacterized protein. (337 aa)
	CAEBREN_17905	Uncharacterized protein. (415 aa)
	CAEBREN_13735	Uncharacterized protein. (1075 aa)
	CAEBREN_00749	DHC_N2 domain-containing protein. (852 aa)
	CAEBREN_19173	Protein kinase domain-containing protein. (1501 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00726	CAEBREN_03813	G0MYP5	G0MGW5	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.564
CAEBREN_00726	CAEBREN_06971	G0MYP5	G0PJC4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.748
CAEBREN_00726	CAEBREN_08579	G0MYP5	G0MHQ9	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.421
CAEBREN_00726	CAEBREN_09798	G0MYP5	G0PA72	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.995
CAEBREN_00726	CAEBREN_13813	G0MYP5	G0MHI3	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.824
CAEBREN_00726	CAEBREN_16930	G0MYP5	G0NR21	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.766
CAEBREN_00726	CAEBREN_18284	G0MYP5	G0MQM6	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.714
CAEBREN_00726	CAEBREN_25332	G0MYP5	G0PMT4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.959
CAEBREN_00726	CAEBREN_25639	G0MYP5	G0MEG7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.593
CAEBREN_00726	CAEBREN_29399	G0MYP5	G0PIR1	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	TPR_REGION domain-containing protein.	0.857
CAEBREN_00726	CAEBREN_32059	G0MYP5	G0NUF2	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	TPR_REGION domain-containing protein.	0.857
CAEBREN_00726	Cbn-che-13	G0MYP5	G0NY00	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CBN-CHE-13 protein.	0.742
CAEBREN_00726	Cbn-dyf-11	G0MYP5	G0N7K4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CBN-DYF-11 protein.	0.657
CAEBREN_00726	Cbn-ifta-2	G0MYP5	G0MRC5	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CBN-IFTA-2 protein.	0.651
CAEBREN_00726	Cbn-klp-11	G0MYP5	G0PG34	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.994
CAEBREN_00726	Cbn-ttll-9	G0MYP5	G0NKR1	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CBN-TTLL-9 protein.	0.505
CAEBREN_00726	Cbn-unc-116	G0MYP5	G0ME07	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.696
CAEBREN_00749	CAEBREN_03813	G0ML57	G0MGW5	DHC_N2 domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.799
CAEBREN_00749	CAEBREN_06971	G0ML57	G0PJC4	DHC_N2 domain-containing protein.	Uncharacterized protein.	0.520
CAEBREN_00749	CAEBREN_09202	G0ML57	G0PF06	DHC_N2 domain-containing protein.	Uncharacterized protein.	0.472

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