(12 nodes) Pyridoxal phosphate-dependent decarboxylase network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_31617	Uncharacterized protein. (763 aa)
	CAEBREN_29282	Uncharacterized protein. (901 aa)
	CAEBREN_28349	Uncharacterized protein. (209 aa)
	CAEBREN_12754	Uncharacterized protein. (515 aa)
	CAEBREN_29238	Uncharacterized protein. (514 aa)
	Cbn-spl-1	CBN-SPL-1 protein. (302 aa)
	CAEBREN_26018	Uncharacterized protein. (606 aa)
	CAEBREN_09476	Uncharacterized protein. (614 aa)
	CAEBREN_01073	Uncharacterized protein. (506 aa)
	Cbn-tag-38	CBN-TAG-38 protein. (538 aa)
	CAEBREN_07116	Uncharacterized protein. (623 aa)
	Cbn-tag-19	CBN-TAG-19 protein. (623 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_01073	CAEBREN_07116	G0NSH9	G0MEJ1	Uncharacterized protein.	Uncharacterized protein.	0.743
CAEBREN_01073	CAEBREN_09476	G0NSH9	G0NFI8	Uncharacterized protein.	Uncharacterized protein.	0.739
CAEBREN_01073	CAEBREN_12754	G0NSH9	G0MPI2	Uncharacterized protein.	Uncharacterized protein.	0.744
CAEBREN_01073	CAEBREN_29238	G0NSH9	G0MPI3	Uncharacterized protein.	Uncharacterized protein.	0.744
CAEBREN_01073	CAEBREN_29282	G0NSH9	G0PAH0	Uncharacterized protein.	Uncharacterized protein.	0.741
CAEBREN_01073	CAEBREN_31617	G0NSH9	G0NYL7	Uncharacterized protein.	Uncharacterized protein.	0.741
CAEBREN_01073	Cbn-tag-19	G0NSH9	G0ME08	Uncharacterized protein.	CBN-TAG-19 protein.	0.744
CAEBREN_07116	CAEBREN_01073	G0MEJ1	G0NSH9	Uncharacterized protein.	Uncharacterized protein.	0.743
CAEBREN_07116	CAEBREN_12754	G0MEJ1	G0MPI2	Uncharacterized protein.	Uncharacterized protein.	0.502
CAEBREN_07116	Cbn-spl-1	G0MEJ1	G0N022	Uncharacterized protein.	CBN-SPL-1 protein.	0.562
CAEBREN_09476	CAEBREN_01073	G0NFI8	G0NSH9	Uncharacterized protein.	Uncharacterized protein.	0.739
CAEBREN_09476	CAEBREN_12754	G0NFI8	G0MPI2	Uncharacterized protein.	Uncharacterized protein.	0.930
CAEBREN_09476	CAEBREN_29238	G0NFI8	G0MPI3	Uncharacterized protein.	Uncharacterized protein.	0.946
CAEBREN_12754	CAEBREN_01073	G0MPI2	G0NSH9	Uncharacterized protein.	Uncharacterized protein.	0.744
CAEBREN_12754	CAEBREN_07116	G0MPI2	G0MEJ1	Uncharacterized protein.	Uncharacterized protein.	0.502
CAEBREN_12754	CAEBREN_09476	G0MPI2	G0NFI8	Uncharacterized protein.	Uncharacterized protein.	0.930
CAEBREN_12754	CAEBREN_29238	G0MPI2	G0MPI3	Uncharacterized protein.	Uncharacterized protein.	0.923
CAEBREN_12754	CAEBREN_29282	G0MPI2	G0PAH0	Uncharacterized protein.	Uncharacterized protein.	0.871
CAEBREN_12754	CAEBREN_31617	G0MPI2	G0NYL7	Uncharacterized protein.	Uncharacterized protein.	0.875
CAEBREN_12754	Cbn-tag-19	G0MPI2	G0ME08	Uncharacterized protein.	CBN-TAG-19 protein.	0.502

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