(12 nodes) Spectrin/alpha-actinin network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_02058	Uncharacterized protein. (1660 aa)
	CAEBREN_07673	Uncharacterized protein. (3673 aa)
	CAEBREN_30577	Uncharacterized protein. (921 aa)
	CAEBREN_20251	PH domain-containing protein. (651 aa)
	Cbn-spc-1	CBN-SPC-1 protein. (2427 aa)
	CAEBREN_14137	Uncharacterized protein. (790 aa)
	CAEBREN_18491	Uncharacterized protein. (1970 aa)
	CAEBREN_23439	Uncharacterized protein. (670 aa)
	CAEBREN_07293	Spectrin beta chain; Belongs to the spectrin family. (2285 aa)
	CAEBREN_09601	Uncharacterized protein. (2251 aa)
	CAEBREN_06207	Uncharacterized protein. (4169 aa)
	CAEBREN_02144	Uncharacterized protein. (4902 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_02144	CAEBREN_06207	G0NIF2	G0NGX8	Uncharacterized protein.	Uncharacterized protein.	0.624
CAEBREN_02144	CAEBREN_07293	G0NIF2	G0MY27	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.626
CAEBREN_02144	CAEBREN_09601	G0NIF2	G0N5F3	Uncharacterized protein.	Uncharacterized protein.	0.756
CAEBREN_02144	CAEBREN_14137	G0NIF2	G0PJ75	Uncharacterized protein.	Uncharacterized protein.	0.624
CAEBREN_02144	CAEBREN_20251	G0NIF2	G0PJE1	Uncharacterized protein.	PH domain-containing protein.	0.626
CAEBREN_02144	Cbn-spc-1	G0NIF2	G0M7G2	Uncharacterized protein.	CBN-SPC-1 protein.	0.756
CAEBREN_06207	CAEBREN_02144	G0NGX8	G0NIF2	Uncharacterized protein.	Uncharacterized protein.	0.624
CAEBREN_06207	CAEBREN_09601	G0NGX8	G0N5F3	Uncharacterized protein.	Uncharacterized protein.	0.943
CAEBREN_06207	CAEBREN_18491	G0NGX8	G0MLE8	Uncharacterized protein.	Uncharacterized protein.	0.624
CAEBREN_06207	Cbn-spc-1	G0NGX8	G0M7G2	Uncharacterized protein.	CBN-SPC-1 protein.	0.943
CAEBREN_07293	CAEBREN_02144	G0MY27	G0NIF2	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.626
CAEBREN_07293	CAEBREN_09601	G0MY27	G0N5F3	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.943
CAEBREN_07293	CAEBREN_18491	G0MY27	G0MLE8	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.624
CAEBREN_07293	Cbn-spc-1	G0MY27	G0M7G2	Spectrin beta chain; Belongs to the spectrin family.	CBN-SPC-1 protein.	0.943
CAEBREN_07673	CAEBREN_23439	G0NIH8	G0MP13	Uncharacterized protein.	Uncharacterized protein.	0.682
CAEBREN_07673	CAEBREN_30577	G0NIH8	G0PGG9	Uncharacterized protein.	Uncharacterized protein.	0.682
CAEBREN_09601	CAEBREN_02144	G0N5F3	G0NIF2	Uncharacterized protein.	Uncharacterized protein.	0.756
CAEBREN_09601	CAEBREN_06207	G0N5F3	G0NGX8	Uncharacterized protein.	Uncharacterized protein.	0.943
CAEBREN_09601	CAEBREN_07293	G0N5F3	G0MY27	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.943
CAEBREN_09601	CAEBREN_14137	G0N5F3	G0PJ75	Uncharacterized protein.	Uncharacterized protein.	0.943

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