(43 nodes) Peptidase M13, C-terminal domain network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_17209	Uncharacterized protein. (856 aa)
	CAEBREN_29093	Uncharacterized protein. (1357 aa)
	CAEBREN_17791	Uncharacterized protein. (687 aa)
	CAEBREN_14207	Uncharacterized protein. (631 aa)
	CAEBREN_01327	Uncharacterized protein. (716 aa)
	CAEBREN_05903	Uncharacterized protein. (811 aa)
	CAEBREN_16325	Uncharacterized protein. (774 aa)
	CAEBREN_30042	Uncharacterized protein. (1139 aa)
	CAEBREN_09693	Uncharacterized protein. (874 aa)
	CAEBREN_25640	Uncharacterized protein. (678 aa)
	CAEBREN_15055	Peptidase_M13 domain-containing protein. (501 aa)
	CAEBREN_03985	Uncharacterized protein. (734 aa)
	CAEBREN_32290	Uncharacterized protein. (695 aa)
	CAEBREN_28768	Uncharacterized protein. (647 aa)
	CAEBREN_17746	Peptidase_M13 domain-containing protein. (137 aa)
	CAEBREN_07971	Uncharacterized protein. (695 aa)
	CAEBREN_08122	Uncharacterized protein. (822 aa)
	CAEBREN_16520	Peptidase_M13 domain-containing protein. (496 aa)
	CAEBREN_32505	Uncharacterized protein. (748 aa)
	CAEBREN_01869	Uncharacterized protein. (689 aa)
	CAEBREN_11500	Peptidase_M13 domain-containing protein. (1291 aa)
	CAEBREN_02842	Uncharacterized protein. (695 aa)
	CAEBREN_04256	Uncharacterized protein. (771 aa)
	CAEBREN_07590	Peptidase_M13 domain-containing protein. (57 aa)
	CAEBREN_23588	ANK_REP_REGION domain-containing protein. (4467 aa)
	CAEBREN_09049	Peptidase_M13 domain-containing protein. (528 aa)
	CAEBREN_24934	Uncharacterized protein. (682 aa)
	CAEBREN_28430	Uncharacterized protein. (678 aa)
	CAEBREN_21284	Uncharacterized protein. (858 aa)
	CAEBREN_30505	Peptidase_M13 domain-containing protein. (483 aa)
	CAEBREN_14568	Peptidase_M13 domain-containing protein. (504 aa)
	CAEBREN_04126	Uncharacterized protein. (1871 aa)
	Cbn-nep-1	CBN-NEP-1 protein. (432 aa)
	CAEBREN_20725	Uncharacterized protein. (783 aa)
	CAEBREN_26097	Uncharacterized protein. (515 aa)
	CAEBREN_00629	Uncharacterized protein. (700 aa)
	CAEBREN_28244	Uncharacterized protein. (385 aa)
	CAEBREN_32066	Uncharacterized protein. (678 aa)
	CAEBREN_23386	Uncharacterized protein. (721 aa)
	CAEBREN_21851	Uncharacterized protein. (1308 aa)
	CAEBREN_32334	Uncharacterized protein. (728 aa)
	CAEBREN_15291	Uncharacterized protein. (801 aa)
	CAEBREN_00330	Uncharacterized protein. (738 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00330	CAEBREN_00629	G0NLA4	G0NQJ9	Uncharacterized protein.	Uncharacterized protein.	0.411
CAEBREN_00330	CAEBREN_01869	G0NLA4	G0P621	Uncharacterized protein.	Uncharacterized protein.	0.400
CAEBREN_00330	CAEBREN_02842	G0NLA4	G0P605	Uncharacterized protein.	Uncharacterized protein.	0.402
CAEBREN_00330	CAEBREN_07971	G0NLA4	G0NQH4	Uncharacterized protein.	Uncharacterized protein.	0.403
CAEBREN_00330	CAEBREN_08122	G0NLA4	G0NQH2	Uncharacterized protein.	Uncharacterized protein.	0.400
CAEBREN_00330	CAEBREN_14207	G0NLA4	G0P626	Uncharacterized protein.	Uncharacterized protein.	0.410
CAEBREN_00330	CAEBREN_28430	G0NLA4	G0NMV9	Uncharacterized protein.	Uncharacterized protein.	0.404
CAEBREN_00330	CAEBREN_28768	G0NLA4	G0NQI3	Uncharacterized protein.	Uncharacterized protein.	0.405
CAEBREN_00629	CAEBREN_00330	G0NQJ9	G0NLA4	Uncharacterized protein.	Uncharacterized protein.	0.411
CAEBREN_01869	CAEBREN_00330	G0P621	G0NLA4	Uncharacterized protein.	Uncharacterized protein.	0.400
CAEBREN_02842	CAEBREN_00330	G0P605	G0NLA4	Uncharacterized protein.	Uncharacterized protein.	0.402
CAEBREN_07971	CAEBREN_00330	G0NQH4	G0NLA4	Uncharacterized protein.	Uncharacterized protein.	0.403
CAEBREN_08122	CAEBREN_00330	G0NQH2	G0NLA4	Uncharacterized protein.	Uncharacterized protein.	0.400
CAEBREN_09693	CAEBREN_14207	G0P625	G0P626	Uncharacterized protein.	Uncharacterized protein.	0.404
CAEBREN_14207	CAEBREN_00330	G0P626	G0NLA4	Uncharacterized protein.	Uncharacterized protein.	0.410
CAEBREN_14207	CAEBREN_09693	G0P626	G0P625	Uncharacterized protein.	Uncharacterized protein.	0.404
CAEBREN_14207	CAEBREN_17209	G0P626	G0NQJ8	Uncharacterized protein.	Uncharacterized protein.	0.404
CAEBREN_17209	CAEBREN_14207	G0NQJ8	G0P626	Uncharacterized protein.	Uncharacterized protein.	0.404
CAEBREN_20725	CAEBREN_28768	G0MQT2	G0NQI3	Uncharacterized protein.	Uncharacterized protein.	0.544
CAEBREN_20725	CAEBREN_30042	G0MQT2	G0PGQ0	Uncharacterized protein.	Uncharacterized protein.	0.484

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