(12 nodes) Ionotropic glutamate receptor, L-glutamate and glycine-binding domain network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-glr-6	CBN-GLR-6 protein. (844 aa)
	CAEBREN_10757	Lig_chan-Glu_bd domain-containing protein. (314 aa)
	Cbn-glr-7	CBN-GLR-7 protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (917 aa)
	Cbn-glr-5	CBN-GLR-5 protein. (927 aa)
	Cbn-glr-1	CBN-GLR-1 protein. (958 aa)
	CAEBREN_28713	Uncharacterized protein. (905 aa)
	CAEBREN_03644	Lig_chan-Glu_bd domain-containing protein. (570 aa)
	Cbn-glr-3	CBN-GLR-3 protein. (724 aa)
	CAEBREN_31280	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (280 aa)
	CAEBREN_20257	Uncharacterized protein. (892 aa)
	CAEBREN_31016	Uncharacterized protein. (824 aa)
	CAEBREN_28776	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (566 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_03644	CAEBREN_28713	G0MSM1	G0N5N1	Lig_chan-Glu_bd domain-containing protein.	Uncharacterized protein.	0.489
CAEBREN_03644	CAEBREN_31280	G0MSM1	G0NYU7	Lig_chan-Glu_bd domain-containing protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.511
CAEBREN_03644	Cbn-glr-1	G0MSM1	G0ME18	Lig_chan-Glu_bd domain-containing protein.	CBN-GLR-1 protein.	0.525
CAEBREN_10757	CAEBREN_28713	G0N523	G0N5N1	Lig_chan-Glu_bd domain-containing protein.	Uncharacterized protein.	0.478
CAEBREN_10757	CAEBREN_31280	G0N523	G0NYU7	Lig_chan-Glu_bd domain-containing protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.484
CAEBREN_10757	Cbn-glr-1	G0N523	G0ME18	Lig_chan-Glu_bd domain-containing protein.	CBN-GLR-1 protein.	0.478
CAEBREN_20257	CAEBREN_28713	G0P2D6	G0N5N1	Uncharacterized protein.	Uncharacterized protein.	0.716
CAEBREN_20257	CAEBREN_31280	G0P2D6	G0NYU7	Uncharacterized protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.666
CAEBREN_20257	Cbn-glr-1	G0P2D6	G0ME18	Uncharacterized protein.	CBN-GLR-1 protein.	0.711
CAEBREN_20257	Cbn-glr-5	G0P2D6	G0MA84	Uncharacterized protein.	CBN-GLR-5 protein.	0.519
CAEBREN_20257	Cbn-glr-6	G0P2D6	G0N5A2	Uncharacterized protein.	CBN-GLR-6 protein.	0.466
CAEBREN_28713	CAEBREN_03644	G0N5N1	G0MSM1	Uncharacterized protein.	Lig_chan-Glu_bd domain-containing protein.	0.489
CAEBREN_28713	CAEBREN_10757	G0N5N1	G0N523	Uncharacterized protein.	Lig_chan-Glu_bd domain-containing protein.	0.478
CAEBREN_28713	CAEBREN_20257	G0N5N1	G0P2D6	Uncharacterized protein.	Uncharacterized protein.	0.716
CAEBREN_28713	CAEBREN_28776	G0N5N1	G0PK10	Uncharacterized protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.703
CAEBREN_28713	CAEBREN_31016	G0N5N1	G0PFR5	Uncharacterized protein.	Uncharacterized protein.	0.718
CAEBREN_28713	CAEBREN_31280	G0N5N1	G0NYU7	Uncharacterized protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.740
CAEBREN_28713	Cbn-glr-1	G0N5N1	G0ME18	Uncharacterized protein.	CBN-GLR-1 protein.	0.967
CAEBREN_28713	Cbn-glr-3	G0N5N1	G0NKK8	Uncharacterized protein.	CBN-GLR-3 protein.	0.715
CAEBREN_28713	Cbn-glr-5	G0N5N1	G0MA84	Uncharacterized protein.	CBN-GLR-5 protein.	0.852

page 1 of 4

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About